Pseudomonas nitroreducens Aramco J, QX33_RS13390
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas nitroreducens strain Aramco J contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCCTCTCCCCAACCCTCTCCCTGAAGGGAGAGGGGGCAGTTCGGCGCCGCCGGTGACTCCGGTGTTCCGCCTTCTGCCGCTCAAGCCCCCTCTCCCGC TTGCGGGAGAGGGCTGGGGAGAGGGCAACCGAGTTCAGGAGCCACGCCAACGCGCGTGCCTCCGCACCGAGTCACTCCCGGACGGACGGGGCCGGGAATA CGGGGCCGCGTCCCCGTCCGTCCGGGTTTGACCTTGCTACCGCGTGCTTCAGCAGCAGAAACATGAGCACCGAATGCTTGTCGGTCCATGGCCCCCACGC AGCAACTCCCAATGCTGGCCATGGAACTTTGAGGCTGTTGGCGGCGATCCCGCCGGCAGCCTCTTTTCTTTTTCCAACCCCGTGGCGCGGCCCCGTATGG CGGCGTCACAGAATGCTCACGCACTGCTCGTCGATGGGGCCTCGATGCTCCACACCTAGCGAAGCGCTGCGGAGCCTCATTTAACCTGCCCTGTACCCAC
|
|
| DNA Sequence for Gene |
>QX33_RS13390
ATGCACCTGAATCCTCTCTCCAGGAAACATCCGCTGCGCACCCGGCTGATCGGCTTCGGCCAGATCTACCTGCAGGCTGACGCACGCTTCGGCCTGATCC TGCTGCTGACCATCGCCTGGTCCGCACCGCAGCTGCTGCCCGGCGCCGTGCTGGGCGCCCTGCTCGGCCCGCTCACCGCGCGCTTCGTGCGCGAGCCGCA GGCGGACATCGACGCCGGCCTGCACGACTACAACCCGATCCTCATCGGCCTGCTGCTGCCCTTCGTATTCCAGTGGTCGCTGGGGCTGGTGATGCTGACC ATCGCCGCCATCCTCACCTCGGTGGCGGTGCAGGCCGTGCTATTGCGGCAGTCACGCCAGCGCTTCGGCCTGCCGGCCTATACCTCGGCCTTCGTGCTGC TGGGCTGGGTGTCGGTGACGCTGGGCAAGGCCCTTGGCTTCGCGCCGGCGGCCGCGACCGCCTGCCTGTCCTGCGGCACGGTGAACCCGTTGCTGGACTC GACGACGCAGGGCTTCGGCGAGGTGATCTTCCTCGGTGAACCGCTCGCCGGCCTGACCATCGCCCTCGGCCTGCTGCTGGCGGATCGTCGCGCCGCGTTC TGGGCGCTGCTCGGCGCCGCAGGCGCCTTGGCCATCGCGCCGCTGTTCGGCCTGCCGGCCGCCTCCGCTCAGGCCGGACTGCTCGGGCTGAACGGCGCGC TGGCCGGGATCGCCCTGTCGCTGCGCTTCCGCAGCCCCCTGGCGCCACTGTGCGGCATCCTCCTGGCGGTGCTGCTGCAACCCTGCTTCGCGCTGGTCGG CCTGCCCGCCTTCACCGCGCCCTTCATCCTCGCCTGCTGGCTGGTGATTCTCGGCCAGCGCGTGCTGGATGCGCTGCTGAGCCAGGGCACGGAACACACC GGGCCGCGTGTATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGGAGCTTTCCACTGGCGACGGACCGCGACCATGCACTTCGTGAAATACCAGGCACTGGGCAATGACTATCTGGTGTACGCCGGCAAAGCGCCCTTTAC CCTGACGCCGGCGCAGATCGGCCGGGTCTGCGACCGCCACTTCGGCATCGGCTCCGACGGCATCCTGCTGGCGAATCACAGCGACAGCGCCTTCGGCCTG CGCATCCTCAATCCGGACGGCTCGGAAGCGGAGAAGAGCGGCAACGGCCTGCGCATTTTCTCCCGCTACCTGTGGGATTGCGGATTGGTCGCAGACCAGC CGTTCGACGTCGTCACCGCCGGCGGTACGGTCACCAGCCAGGTATTCGACGAGGGGCGCACCGTCGAGGTATCCATGGGCCGCGCCGAGTTCGCCTGTGC AAGGATTCCGGTGCGGGTCGATGCCCCCGAGGCGCTGGGCTATCCACTGGAAATCGACGGCGTAGCGCTGGAGATCAACGCCGTTTCCATGGGTAATCCG
|
|
| Amino Acid Sequence |
>transporter
MHLNPLSRKHPLRTRLIGFGQIYLQADARFGLILLLTIAWSAPQLLPGAVLGALLGPLTARFVREPQADIDAGLHDYNPILIGLLLPFVFQWSLGLVMLT IAAILTSVAVQAVLLRQSRQRFGLPAYTSAFVLLGWVSVTLGKALGFAPAAATACLSCGTVNPLLDSTTQGFGEVIFLGEPLAGLTIALGLLLADRRAAF WALLGAAGALAIAPLFGLPAASAQAGLLGLNGALAGIALSLRFRSPLAPLCGILLAVLLQPCFALVGLPAFTAPFILACWLVILGQRVLDALLSQGTEHT GPRV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|