Pseudomonas nitroreducens Aramco J, QX33_RS08855
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas nitroreducens strain Aramco J contig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTCTTGATGTCTGGTTGCGGGAGCAGGATTTGAACCTACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACTGCTCCATCCCGCGGCGGCAATTCT ACGGATATGAAGCCTCGTGTCAAACGATATTTCGTTTTCGATCAATAATTTAAATCGCGCGCAAACGAAAAAGGCCACTCCGAAGAGTGGCCTTTTCCTG TGTCTGGTTGCGGGAGCAGGATTTGAACCTACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACTGCTCCATCCCGCGACGCCCATTCTACGCCGGT GCGCCCGGGTGTCAATGAAAAAAGGGGAAAAGTGATTTTCTATCAGATATTTAGCCGCCAGGAATGGAATCGTCGCAGGGATCGACAACGGGGATTTCCG CGGCTGTGGATAACCGGGACGGCAGGTTTTTGCATTACCATGGGCGGGTTTTCCGTCTTCTATAAGGGCGGTTTCCGTTGGTGATGCAGGCGCCTCCTTC
|
|
| DNA Sequence for Gene |
>QX33_RS08855
GTGACTCGGCAGAGAAAGATCATCCACATCGATTGCGACTGCTTCTATGCCGCCATCGAGATGCGCGACGACCCCAGCCTCGCGGGCAAGCCGCTGGCCG TGGGCGGGTCGCCGGACAAGCGTGGCGTGGTCGCGACCTGCAATTACGAGGCGCGTGCCTACGGCCTGCATTCGGCCATGGCCATGCGTACCGCCGTGAA ACTCTGCCCGGACCTGACCATCGTCCGCCCGCGCATGGACGTCTATCGCGAGACCTCGCGGGACATCCACGCGATCTTCCGCGACTACACCGACCAGATC GAGCCGCTGTCCCTGGACGAGGCCTACCTCGACGTCAGCGACAGCGAGCGTTGCGGCGGCAGCGCCACACGTATTGCTCGAGAGATTCGCCAGCGCGTCT GGGAGACGCTGCACATCACGGTGTCCGCCGGGGTGGCGCCGAACAAGTTCATTGCCAAGATCGCCAGCGATTGGCGCAAGCCCAACGGCCTGTTCGTGGT CACCCCCGATGAGGTCGACGGTTTCGTCGCCGAACTGCCGGTGAAGAAGCTGCATGGCGTGGGCAAGGTCACCGCCGAGAAGCTGGCGCGCTTGGGCATC CGTACCTGCGCGGACCTGCGCGACTGGTCGCGGATCCAGTTGGCCAAGGAGTTCGGAAGTTTCGGCGAGCGGCTCTGGGGACTGTCGCGTGGCATCGACG AGCGCCCGGTGCAGGTGGACAGCCGGCGGCAATCGATCAGCGTGGAGAACACTTTCGACCAGGACCTGCCGGACCTGGCAGCCTGCCAGGAAGAATTGCC GTCACTGCTGGGTGAACTGGAGCGGCGCATGACGCGCCTGGACGCCAGCTATCGGCCGGGCAAGCCGTTCATCAAGCTGAAGTTCCACGACTTCACCCAG ACTACCCTGGAGCAGGCCGGCGCCGCGCGGGATCTGGAAAGCTATCGGCTGCTGCTGGGGCAGGCCTTCCAGCGCGGCAACAAGGCGGTTCGACTGATCG GCGTAGGCGTGCGCCTCGTCGATCTGCGCGGCGCCCACGAGCAATTGACGCTCTTCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCTGCCCGGAAGAGCCTCAGCCTTCCGGCCACAGGCGCATGGCGCGGCCGCTGGCCGGCCACAGGCGCAGTTCGCCTTCTTCGGTGATGTCCCAGCGCT GCACCTGGCCGAGCATCTTGAGGAACTGCTGTTCCTGCTCCATCACCAGATCGGCGCAGAGCTTGCGGGTGGCGCCCGGCTGGCCGAAGGTCAACTGGTC GCCCTCGAGCTTGTAGCTGGCGAACCAGTGGTTGCAGCCGGCGCTGCCATAGGCGCGGCCGTTGCCGTCCAGGGTCAGGCTGATGTGGGTGTAGTCGATC AGCGGGCGCTCACCGATCCATTCCACGCGGTAGTTCTGCTCGGCTTCGGGCACCGGCTTGCTGGCGCAGCCGGCCAGGGCCAGCGCAGCGCAAGCGCTGG CAATCAGGGTTTTCATGCGGTCTCCTTGCTCTGGCAATCCGGGCAAAGGTGGCGCTTGCCGGCCTTGGCCCATCCGAGTTCGGCGATGCGCGCTTCGGCG
|
|
| Amino Acid Sequence |
>DNA polymerase IV
MTRQRKIIHIDCDCFYAAIEMRDDPSLAGKPLAVGGSPDKRGVVATCNYEARAYGLHSAMAMRTAVKLCPDLTIVRPRMDVYRETSRDIHAIFRDYTDQI EPLSLDEAYLDVSDSERCGGSATRIAREIRQRVWETLHITVSAGVAPNKFIAKIASDWRKPNGLFVVTPDEVDGFVAELPVKKLHGVGKVTAEKLARLGI RTCADLRDWSRIQLAKEFGSFGERLWGLSRGIDERPVQVDSRRQSISVENTFDQDLPDLAACQEELPSLLGELERRMTRLDASYRPGKPFIKLKFHDFTQ TTLEQAGAARDLESYRLLLGQAFQRGNKAVRLIGVGVRLVDLRGAHEQLTLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|