Pseudomonas nitroreducens Aramco J, QX33_RS27465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas nitroreducens strain Aramco J contig18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCAACTCGCGCTGCTCGTTGCTCACCGAGCCACGCCGGGCCAGGCAGATGAAGCCGTACTCATCGCACCCACTGTAGACAAGGTCATTGGGCTCGACA GCATCAGCGGCGAAGCGCTTCAAGAAATTGCCGATGGAGTCTTCGTCCTTACCCTCGCGGTACTTGAAGCTCAACTCGAAACCGAGCTCCTGGAACTCAT CGACACACAACTTCTTGCGTAAACGACGGGAACGATGGGTGGCCATCTGAATCTCTCCTCATGAGGGCTTCGCCACTCGACGAACAAGTGTGCCCGAGCC AAATACACAACTTGCGCCAGCACAGTCACGCAGTATCTCGTCGAGACGACCGGCTCTCGAAGGCCTGCGCATACTGGAACGGCTTGCGGCATAATGTGCC GCGTCTCCCAGTCCAACAGGGAGTACTTCAACTGTAGTGTTGCGCTTCATCTTTTCATTTTTTCAAGTCAATGCCCGACCACTGGGATGTCATCTTTTCT
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| DNA Sequence for Gene |
>QX33_RS27465
ATGTTCAAGTCTCTGCGCGTCCTCGCTCTCGCCACATTACTGCCCTTTGCCTTACCCGCCGTTGCCCAGATCAACACCACCCTGCCCGAGCGCGTACAGA AGGCGCTGAGAGCCAGCAAGCTCACCGATGACGCTCTCTCGCTGGTGATGATTCCGCTCGAAGGCCCCGGTAACGCCACTTATTTCAACTCCGACGTCTC GGTGAACCCGGCGTCGACCATGAAGCTGTTCACCACCTATGCCGCCCTGGAGATGCTCGGCCCGACCTATCAGTGGCAGACCGAGTTCTACACCGACGGC CAGCTCAAGGACGGCGTCCTGAACGGCAACCTGTATCTGAAGGGCGGCGGCGATCCGAAGCTGAACCTGGAGAAACTCTGGTTGATGATGCGCGACCTGC GCGCCAATGGCGTGCTCAAGGTCACCGGCGACTTGGTGCTGGACCGCAGCTACTTCAATATTCCGCAGTTGCCGGTGTTCAATGACGACGGCGGCGACGA CAACAAGCCGTTCCTGGTCGGCCCCGACTCGCTGATGGTCAACCTGAAGAGCGTGCGTCTGGTAATCCGCACCGAGGGCAGCAAAGCCACTGTCCTGATG GACCCGCCGCTGGCGAACGTGCGCATCGACAACCAGATCCAGGTGAGCAAGGCCGCCGCCTGCCCGGCCTGGCCGAAGCTGCGTTTCAACCCCGTGACCC AGTTCGACGGTACCTCGCTGGTCGCCACCGGGCAGATTCCGCAAGGCTGTAGCGCACAGACCTACATGTCCCTTCTCGAACACCCCGCCTACACCGCGGG TGCCGTGCGCGGCATCTGGCAGGAACTGGGCGGCAGCATCCTCGGCAAGGACCGTGAAGGCGCCGTACCGAAGAACGCCACCCTGGTGGCCCGCGCCATG TCGCCGGACGTCGTGGAAATCATCCGCGACATCAACAAGTTCAGTAACAACACCATGGCCCGCCAGCTGTTCCTCTCGGTCGGCCGCCAGTACCGCAACG GCGCCGACGCAGACGACGCCCAGGCCGCGCAGCGGGTGATCCGCCAGTGGCTGGCGCGCAAGGGCATTACCGCCAGCCACCTGGTGATGGAGAACGGTTC CGGCCTGTCCCGCGACGAGCGCGTCAGCGCTCGCGAGATGGCTGCCATGCTGCAAGCCGCGTGGCACAGCCCCTATGCTGCCGAGTACATTTCCTCGCTG CCGATCGTGGCGAAGGACGGCACCATGCGCAAACGCCTGCGCGGCACGCCCATGGCCGGCGAAGCCCACGTGAAGACCGGCACCCTGAACACCGTACGCG CACTTGCCGGCTTCAGCCGTGACGCCAACGGCCGCACCTGGGTCGTGGTGGCAATTCTCAACAGCAACCGCCCCTGGGGTGCCTCGTCGATCCTCGACCA GGTACTGCTGGATCTCTACAGCAGCACCAAGCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCAACGCGAGCCCCGGCCAACAGGCCGGGGTTTTCGCATCAGGCTTCGACCTTTTCCAAACGGTCGCGCCCCAGGCGCTTGGCGCGATAGACCGCTCGG TCCACCTTGCGCATCAGATCATCGGCGCTTTCCCCAGGGGACCAGGAGGCGACTCCGAAGCTCGCCGTGACCACGCCCACTCCCTCCATCGGCTGACCAC GCAATGCCTGCCACAGCGCCTCGGCCAACTGCCAGGCCTGCTCCGTGGTACTGCCCGGGCAGAGCACCACCAGCTCCTCGCCTCCCAGGCGACAGAACAC ATCCACCTTGCGCAGGCGCTGGGAAATGCGCTGGCACAAGGTCACCAGCACGATATCCCCCGCCTCGTGGCCAAAGCGGTCGTTGATATTCTTGAAGTGG TCGATGTCGAACATCACCAGCGACAGCGGCTCGCCGCTGCGCGAGCAGCGTGCCATGGCCTGGTCCAGTTGCTCCTTGAAATAACGGCGGTTGTGGATGC
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| Amino Acid Sequence |
>D-alanyl-D-alanine carboxypeptidase
MFKSLRVLALATLLPFALPAVAQINTTLPERVQKALRASKLTDDALSLVMIPLEGPGNATYFNSDVSVNPASTMKLFTTYAALEMLGPTYQWQTEFYTDG QLKDGVLNGNLYLKGGGDPKLNLEKLWLMMRDLRANGVLKVTGDLVLDRSYFNIPQLPVFNDDGGDDNKPFLVGPDSLMVNLKSVRLVIRTEGSKATVLM DPPLANVRIDNQIQVSKAAACPAWPKLRFNPVTQFDGTSLVATGQIPQGCSAQTYMSLLEHPAYTAGAVRGIWQELGGSILGKDREGAVPKNATLVARAM SPDVVEIIRDINKFSNNTMARQLFLSVGRQYRNGADADDAQAAQRVIRQWLARKGITASHLVMENGSGLSRDERVSAREMAAMLQAAWHSPYAAEYISSL PIVAKDGTMRKRLRGTPMAGEAHVKTGTLNTVRALAGFSRDANGRTWVVVAILNSNRPWGASSILDQVLLDLYSSTKH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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