Pseudomonas nitroreducens Aramco J, QX33_RS26675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas nitroreducens strain Aramco J contig17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGGCTCCGCGAGTGCAGATCGAGTACGACGTCGAAATCTACGGTTCGGAGAAGAAAATCCAGCTGCCTTTCGTTATGGGGGTCATGGCGGATCTGCTG GGCAAGCCCCTGGAAGCGCCCACGGCGCTGGCTGATCGGCGTTTCCTCGAGATCGATATCGACAATTTCGACGAACGAATGAAGTCGCTCAAGCCGCGCG CAGCCTTTCAGGTAGAGAACACCCTGAATGCCGACGGCAGTCGGCTCAGTGTCGACCTCACGTTCCAGAGCATCGACGACTTCGAGCCTGGCGCGCTAGC TCGCAAAGTCGAACCACTCAACCAATTGCTGCAGGCACGCACCGAGCTCTCCAACCTGCTCTCCTACATGGACGGCAAGAGCGGGGTAGAGGAACTACTG GCTAAAGCGCTGGAGAATCCCGCCCTACTCAAGTCCCTCGTGGCGTCGAGCAAACCCGCCGCGGACGCGGACTGATCCCATTGCCTAGCGGAGAACAATG
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| DNA Sequence for Gene |
>QX33_RS26675
ATGAGCGCGGCCAATCAAGTTCAGACAGCCAGTACCGAGCAACAGGTCCTCGACCGGGACATGTTCGCCTCGCTGTTGACCAAGGAGTTCAAACCCAAGA CCGACCAAGCGCGCGAGGCAGTCGAACATGCGGTGAAAACTCTGGCAGAGCAGGCACTGGAAAATGCCGTAGTCGTCTCCGGCGACTCCTATCGCTCGAT CCAGGCCATCATTGCCGAGATCGACCGCAAGTTGTCCGAGCAAATAAATCAGATCATCCATCACGCCGACTTTCAGGAGCTGGAAAGCGCTTGGCGCGGC CTCCACTATCTGGTGAACAATACCGAAACCGACGAGATGCTGAAGATCCGTTTCATGCCCTTGTCGAAGAAAGAACTCAATCGCGAGCTGAAGCGCCACA AAGGCGCCGGCTTCGATCAGAGCGCGATTTTCAAGAAAATCTACGAAGAAGAGTACGGTCAGTTCGGCGGTGAGCCGCTAGGCTGCCTGGTCGGCGACTA CTACTTCGACCACAGCCCACAGGATGTGGAAACACTGCGTGAAATGGCCAAGATTGCCGCAGCCGCGCACTCGCCCTTTATTGCGGCCGTGGCTCCGTCA GTAATGCAGATGGAGTCCTGGCAGGAGCTGGCCAATCCACGCGACCTCACCAAGATATTCCAGAACACCGAATATGCCGCCTGGCGGAGCCTGAGGGAGT CGGAGGATGCACGCTATCTCGGTCTGGCCATGCCGCGCTTCCTGGCCAGGCTTCCCTATGGCGCCGCCACCAGCCCCGTGGATGATTTCGCCTTTGAGGA AGATACCGCCGGTAGTGCCCACGAACGCTACACTTGGTGTAACTCCGCGTATGCAATGGCAGTGAACATCAACCGTTCGTTCAAGCAGTTCGGCTGGTGT ACCTCGATTCGCGGCGTGGAGTCCGGTGGCGCGGTGGAAAACCTGTTCTGCCACACCTTCCCCACCGATGATGGTGGCGTCGATTTGAAGTGCCCAACGG AAATCGCCATCAGTGATCGTCGTGAGGCAGAACTCGCCAAGAACGGCCTGATGCCTTTGGTGCATCGCAAGAATTCTGACTTCGCGGCGTTCATTGGTGC TCAATCCCTGCAACAACCGGCGGCTTACTACAACGCCGATGCCACGGCCAATGCCAACCTTGCTGCACGTTTGCCATACATGTTTGCGTGCTGCCGCTTT GCGCATTACCTCAAGTGCATTGTTCGAGACAAGATCGGCTCATTCCGCGAGCGCGATGAAATGGAGAGATGGCTCAACAGCTGGATCCTGAGCTACGTCG ATGGTGACCCACTCAATTCTTCCCAGGAAACTAAGGCGAAGAAACCTCTGGCAGCTGCCGAAGTGCAAGTCGAAGAAATTGAGGACAACCCAGGTTATTA CACTGCCAAGTTCTTCCTACGCCCGCACTATCAACTGGAAGGATTGACCGTATCCTTGCGCTTGGTCTCGAAGCTTCCGTCGTTGAAGCAAGATGAAGGC TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGAAAAAACTGAAAAAACGCAAAAATAGAAAACTCAAAAAAGACTAACAGGGACTTTCAACAAGTCTCCATGGATGGCTTTACTCTTACGATATTAAAA ATCAATTTCGCCCCGCACCAGGAGTGTGTCGAGCGAAATCAAGAAGACGGTTATCCACGCCCAACTAATGGAGTTCGTGGGATGTTGACCGCAGCGTAGA AGCAGCACATTTAAAGACTAAACAGGAGTTTATCATGTCTGTAGATATGTATCTGAAGGTTGATGGCGCTGTTGGCGAGTCCAAGGATGCCAACCACAAG GAGTGGAGCGATCTCATATCGTTGGATTGGGGAGCGTCCCAGCCCGGTAGCATGACCACCGGAGGCGGCGGTGGTATCGGCAAAGTCAGTTTCAATGACC TCAACGTCGTGGCACGCCTCGACAAAGCCGCACCAGCCATCATGAAGTACTGCGCCAGCGGAAAGCATATTGGCACGGTCGAAATTTCCGTCTGCAAGGC
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MSAANQVQTASTEQQVLDRDMFASLLTKEFKPKTDQAREAVEHAVKTLAEQALENAVVVSGDSYRSIQAIIAEIDRKLSEQINQIIHHADFQELESAWRG LHYLVNNTETDEMLKIRFMPLSKKELNRELKRHKGAGFDQSAIFKKIYEEEYGQFGGEPLGCLVGDYYFDHSPQDVETLREMAKIAAAAHSPFIAAVAPS VMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLGLAMPRFLARLPYGAATSPVDDFAFEEDTAGSAHERYTWCNSAYAMAVNINRSFKQFGWC TSIRGVESGGAVENLFCHTFPTDDGGVDLKCPTEIAISDRREAELAKNGLMPLVHRKNSDFAAFIGAQSLQQPAAYYNADATANANLAARLPYMFACCRF AHYLKCIVRDKIGSFRERDEMERWLNSWILSYVDGDPLNSSQETKAKKPLAAAEVQVEEIEDNPGYYTAKFFLRPHYQLEGLTVSLRLVSKLPSLKQDEG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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