Pseudomonas nitroreducens Aramco J, QX33_RS22925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas nitroreducens strain Aramco J contig12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGACTTGCCGGTCCTCGTTAGACCTTCGTGTAGTAGCCCAAAAAAAACACTACAAAACGTTTGACGAACGCTCGTTTGAAAGGGCATGATGGCCTCGC TCCCGCTAACCAGAGGGCCTCAAAGCCCTTCGGACCAAGCCAGTGGCCCATCCGCCATGCAGGTCCGTGTTGTTAAGCCCACAAGGCGGATCGACGAGGT TGCGACTGGCAAGAGGTTGTCCTGAGGGACGGGGAAGCAAGCCTAAGCAACAGCACGAAGTGACGGATTCAGCCGTCCACCATCGCCCAACGGCTGCCAC GAGCCGGCAAGCGATTCTGGATGTCACCGCTGCAGTCACGAGTCTGTACGCCGCGCCACCCCATTCCTCCAGCGTCATTCCTTCTTTCGGTCGCCCCTTC GCCCTCCCGCGGCGAGCAACCCGCAGTCAATTCCGTTTCGATACAGGTTTTGAGTGGGTAAGTCGGTGCTCAACCAAACATATACTTTGAAGGATTGACC
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| DNA Sequence for Gene |
>QX33_RS22925
ATGTCCGCATATCAAAACGACATCAAAGCCGTTGCCGCTCTGAAAGAGAAAGCCGGTAACAGCTGGAGCGCTATCAACCCCGAGTCGGTTGCCCGTATGC GCGCTCAGAACCGCTTCAAGACTGGTCTGGACATCGCCAAGTACACTGCGGCCATCATGCGCAAGGACATGGCCGAGTATGACGCCGACAACTCCGTCTA CACCCAGTCCCTGGGCTGCTGGCACGGCTTCATCGGTCAGCAGAAGCTGATCTCGATCAAGAAGCACCTGAAGACCACCAACAAGCGCTACCTCTACCTG TCCGGCTGGATGGTTGCCGCGCTGCGCTCCGACTTCGGCCCGCTGCCCGACCAGTCCATGCACGAAAAAACCGCCGTCTCCGGCCTGATCGAAGAGCTGT ACACCTTCCTGCGCCAGGCTGACGCCCGTGAGCTGGACCTGCTCTTCACCGCCCTGGACAGCGCCCGCGCCGCCGGCGACAAAGCCAAGCAGGACGAAAT CCAGGCCCAGATCGACGGCTACGAAACCCACGTCGTACCGATCATCGCCGACATCGACGCCGGCTTCGGCAACCCGGAAGCCACCTACCTGCTGGCCAAG AAAATGATCGAAGCGGGTGCCTGCTGCATCCAGATCGAGAACCAGGTTTCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAAGTGACCGTTCCGCACG AAGACTTCCTCGCCAAGATCAACGCTGTTCGCTACGCATTCCTCGAACTGGGTGTTGACGACGGCGTGATCGTTGCCCGTACCGACTCCCTGGGCGCCGG CCTGACCAAGCAGATCGCCGTGACCAAAGAGCCGGGCGACCTGGGCGACCAGTACAACTCCTTCCTGGATTGCGAAGAAGTTTCCGCTGCCGAACTGCAG AACGGCGACGTGGTGATCAACCGCGGCGGCAAACTGCTGCGTCCGAAGCGCCTGGCTTCCAACCTGTTCCAGTTCCGCAAGGGCACCGGCGAAGACCGCT GCGTCCTCGACTGCATCACCTCGCTGCAGAACGGCGCTGACCTGCTGTGGATCGAAACCGAGAAGCCGCACGTTGGCCAGATCAAGGGCATGGTTGACCG CATCCGCCAAGTCATCCCGAACGCCAAGCTGGTGTACAACAACAGCCCGTCGTTCAACTGGACCCTGAACTTCCGCCAGCAGGTCTTCGACGCGTTCGTT GCCGAAGGCAAGGACGTTTCCGCCTACGATCGCGCCAAGCTGATGAGCGTCGAGTACGACGAGACCGAGCTGGCCCAGGTTGCTGACGAGAAGATCCGCA CCTTCCAGCGCGATGGTTCCGCCCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCACACCGCCGCTCTGTCGACCGACAACCTGGCCAA AGGCTACTTCGCCGACCAGGGCATGCTGGCCTACGTGAAAGGCGTTCAGCGCCAGGAACTGCGTCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCC GGCTCGGACATCGGCGACAACCACAAAGAGTACTTCGCTGGCGAAGCCGCTCTGAAAGCCTCGGGTAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAACTGGCTCACCGGCCCTTCGGGGCCGGGAGGCACCGCAAAACCCCGGCCCAGGCCGGGGTTTTGCTTTTTACGCTTGGCCGAACCGCCAGCCCCCCAC TTCCTGCCCGCCAAGGGCAGATCGGCATCCACATGCCAGCCTCGGGCTTCCTTTGTATGAATGGAAACATCCATGCCCCAGCGCAACCGCCTCGCACTCG CCGCTCATCTCATCCAGCGCCTGCCGCACCAACTTCACGAATCGCTGCTCAGTCGCCTGTTCTGCTCCCAGGTACGCTTCGCCGGCACCGCGGGCATACG CATCCAGAAGCTCTCCAGCGATGAGGTACGGATGAGCCTGGCCAACCACCGCCGCGCCCGCAACCACATCGGCGGCGTACATGCTGCGGCCATGGCGCTA CTGGCCGAATCCGCCAGCGGCTGCCTGGTCGGCATGAATCTGCCCGATCACAAGCTGCCGCTGATCAAGACCCTCAAGGTGGATTACCTGCGCCGAGCCC
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQNDIKAVAALKEKAGNSWSAINPESVARMRAQNRFKTGLDIAKYTAAIMRKDMAEYDADNSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSDFGPLPDQSMHEKTAVSGLIEELYTFLRQADARELDLLFTALDSARAAGDKAKQDEIQAQIDGYETHVVPIIADIDAGFGNPEATYLLAK KMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTKQIAVTKEPGDLGDQYNSFLDCEEVSAAELQ NGDVVINRGGKLLRPKRLASNLFQFRKGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQIKGMVDRIRQVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV AEGKDVSAYDRAKLMSVEYDETELAQVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQRQELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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