Pseudomonas nitroreducens Aramco J, QX33_RS21330
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas nitroreducens strain Aramco J contig10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGTCCGCTGATCGACGACGTGCTGGCCATCGCCAAGCGTCCGGTGATCGTCTCCCACACAGGTGTCGCGGGCACCTGCCCCGGCCCGCGCAACCTGAC CGACGCGCACCTGCGCGGCATCGCCAACACCGGCGGGGTGATCGGCATCGGCTACTGGGACGGCGCGGTCTGCGAGACATCCGTGGACGCCATCGTCAAG GCGATGCGCTACGCGGCCGATAAAGTGGGCGTCGAGCACATCGCGCTGGGCTCCGATTTCGACGGTGCGGTGAACGCGCCCTTCGACACCACCGGCCTGG CACAGCTGACCCAGGGTCTGGCGAAGGCCGGTTTCAGCAACCAGGACATCGCCGCGATCATGGGCGGCAACGTGCGCCGGCTGCTGCTGGAGAGCCTTCC GTAGGCCAAGTCAATAGGCAGGATGCCCGTGGCACTTCGCCCTGCGGGCATCTTGCATTACACTGGCGGCCGTTCATTCCTTAACCAACACGAGACAGCC
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| DNA Sequence for Gene |
>QX33_RS21330
GTGCTTAAAGCACTCAAGAAAATCTTCAGCAAGGGCGACGGCGAGCAACCCGTGGCCACGCCAGCGGCCCCCGCTCCCGCCGCAGAAAAGCCCGCCCAGA GCGGTGAAAGACGTCCGCGCAAACCGCGCAACCCGCGCCCGGAAGGCGAATCCGCGGAGAAACCGGCCCGCGGCCCGAAGAGCGACAAACCCCGCGCCGA GCGTTCCGACAAAGGTGAACGTGGCGAAAAACGCGACCAGGCAGCCAAGGCCGAGCCCGCAAAGACCGAAGGCGCCGACAAGCCCCGCGAGCCCAGGGCC GACAAGCCGCGCCGCGAACGCAAGCCGCGCCCGCCGGTGGTCGATAACTGGAAGCTGGAAGACTTCGTCGTCGAGCCGGCCGAAGGCAAGACCCGTTTCC ACGACTTCAACCTCGACCCGCGTCTGATGCATGCCATCCATGACCTGGGCTTCCCCTACTGCACGCCGATCCAGGCGCAGGTACTGGGCTTCACCCTGCG CGGCCAGGACGCCATCGGCCGTGCCCAGACCGGCACCGGCAAGACCGCCGCGTTCCTCATCTCGATCATCACCCAGCTGTTGCAGACCCCGCCGCCCAAA GAGCGCTACATGGGCGAGCCGCGTGCGCTGATCATCGCGCCGACCCGCGAACTGGTGGTGCAGATCGCCAAGGATGCCGTCGGTCTGGCCAAGTACACCG GCCTGAACGTCATGAGTTTCGTCGGCGGCATGGACTTCGACAAACAGCTCAAGACCCTGGAATCGCGCTTCTGCGACATCCTCGTGGCAACCCCAGGCCG CCTGCTGGACTTCAACCAGCGCGGCGAGGTGCACCTGGACATGGTCGAGGTGATGGTACTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCATCCCG CAGGTCCGCCAGATCATCCGCCAGACCCCTTACAAGGGCGAACGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGACGACGTGATGAACCTGGCCAAGC AGTGGACCGTCGACCCGGCCATCGTCGAGATCGAGCCGGAGAACGTCGCCAGCGATACCGTCGAGCAGCACGTCTACGCCGTTGCCGGCAGCGACAAGTA CAAGCTGCTGTACAACCTGATCGCGCAGAACGACTGGACCCGCGTAATGGTCTTCGCCAACCGCAAGGACGAAGTGCGGCGCATCGAGGAACGCCTGACC AAGGACGGCATCAGCGCCGCCCAGATGTCCGGCGACGTGCCGCAGCACAAGCGCATCAAGGTCCTGGAAGGCTTCCGCGAGGGCAAGATCCGCGTGCTGG TCGCCACCGACGTCGCCGGCCGCGGCATCCATGTCGACGGCATCAGCCACGTGATCAACTTCACCCTGCCCGAGGATCCGGACGACTACGTGCACCGCAT CGGCCGTACCGGCCGCGCCGGCAGCACTGGTACGTCCATCAGCTTCGCCGGCGAGGACGATGCCTTCGCCCTGCCGCCGATCGAGGAACTGCTGGGCCGC AAGATCAACTGCGAGATGCCCCCCACCGAGTTGCTCAAGCCGGTTCCGCGCAAGCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCGCTGCACCAGCTTTCTGCTCCAAAACAAGGCGAAGCCACCTGGCTTCGCCTTTTTTGTTTCCATCGACGTTACGTCCGGTGACGTCACCCCTCT CCTCCGCTGAAACACATGCCGGTCCCCGCGCCAGAGCCTCGGGTTTTTCCCGCCGGACCCGCTGGGACGACCGTGCGGGATTCCCCGCAAACAATGGCAC CGCGCCATCCCTGTCACGAAATCAGCCCCGCCCCGGCCATTTCCGCTCAGTTTTATTTACAGACGTAAAAAAATTCGCACGCTTCTTGCAAAGCACGCGA GAACAATTCCAAGAACTCGTCGGAATCCTCCCATGCCCTTGCGCGCCAAACTTGCTCTGAGTTTCCTCTCGGTCGGCCTGATCCCCGTCCTGGTGATGGC CATCGTGGTCTATCTCCAGGCCAGCCGGGCCCTCGAAGAACAAAGCCTCAACGCCCTGGAGGCGGTCGCCAGCATCAAGCAGCGACAGCTGATGGACGCC
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| Amino Acid Sequence |
>RNA helicase
MLKALKKIFSKGDGEQPVATPAAPAPAAEKPAQSGERRPRKPRNPRPEGESAEKPARGPKSDKPRAERSDKGERGEKRDQAAKAEPAKTEGADKPREPRA DKPRRERKPRPPVVDNWKLEDFVVEPAEGKTRFHDFNLDPRLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPK ERYMGEPRALIIAPTRELVVQIAKDAVGLAKYTGLNVMSFVGGMDFDKQLKTLESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIP QVRQIIRQTPYKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLIAQNDWTRVMVFANRKDEVRRIEERLT KDGISAAQMSGDVPQHKRIKVLEGFREGKIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGSTGTSISFAGEDDAFALPPIEELLGR KINCEMPPTELLKPVPRKH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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