Pseudomonas aeruginosa UCBPP-PA14, PA14_21080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGCGCCAGGCCGAGATAGCCCTCCCAGGACAAACGGCGCACCGGGAAACCGGCCCAGCCGAACTGGTCGCAGAGCGCCGAGACCAGCATCTGCCCGGC CACCACGCACGCGATGAAAGTGGCGGCGCCCAGGCGCGGCGCGACCAGGATCGCCACCGTCAGGTAGGCCGCGCCGAACAGCCCGCCGAGCCAGCTCCAC CAGGGCGCGCCGCCGAGGCTGGCGGTAGCCGGCAGCGGCACCCGCACCAGCAGCAGGCCCAGGCAGACCGCCCCGAGGCTGACGCCCAGCGAAGTCAGGC TGGCGCTCAGCGGATGGCCGAGCAGGCGCCCGAGCAAGGCGTTGCTGCCGGCCTGCAGCACCACCATGCCGCCCACCGAAACTGCCATCAGTACCATCAG ATAATTGGGCATGCTGATTCTCCTCCTCCGGCCATTGCCTCTGGAGCGGAGTTTTTGCTATCCACTTCGCGAATGGAAATCGATAGTTGGTACAGCCTCC
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| DNA Sequence for Gene |
>PA14_21080
ATGCAGCAGATTCATGACCTACGCCGTATCGACCTCAACCTGCTGGTGGTGCTCGACGCGCTCCTCAGCGAGCGCCACGTGTCCCGCGCGGCGCAGCGCC TGGCCATGTCGCAGCCGGCGGTCAGCCACGCCCTCGGGCGTCTCCGCGAACTGTTCGGCGATCCGCTGCTGGTGCGGGTGAAAAGCCGCATGCAGTTGAC CAGCCTGGCGCTGGAGCTGGCGCCGAAGCTCCAGGCCAGCCTCGACCAGGTGCGCGGGGTGATCGGCGGGCCGGCCTTCGAGCCGGTGCGCAGCCGGCGC CACTTCCGCCTGGGCATGTCCGACTACGGCGCCTGGGTGGTGCTGCCGGCGCTGCTGCGCCAGCAACAGGCGCTGGCGCCCGGGGTGAGCTTCGGGATAG TCCAGGAACCGCGCCTGGAAACCGCCCGGCAGGTCGCCGAAGGACAACTGGACTGCGCGCTGGGGGTATTCCCCCTGCTTCCGGAGGGCGTGCGCGCCAG GCGCCTGTTCGAGGAGCGTTTCGTCTGCGTCTGTCGGCGCAGCCTGTTCGACCGCCCCGACGGCCTGTCCCTCGACCGCTACCTGGCGGCCCGCCACGTG CGCGTCTCGCTACAGGACAACCCGGCCGAGGAAGTCGACAGCGCCCTGGAAAAGCGCGGCCTGCGCCGGCAGGTAGCGCTGACCCTGCCGCACTTCACCG TGGCCCCGGCGCTGCTGGCCGGCACCGACCTGGTACTGACCATCGCCGAGCGCATCCTCGAACGCCTGCGGTTACCCGAGGAACTGGCGGTCTGCGAGCC GCCGCTGGCGATCCCGCGCTTCGACTACGTGCAGATCTGGCGCGGCGACGCCGAGCGCGAAGCGGCCGGCGCCTGGCTGCGGGAACAGATCCAGGCGGCG GCGCGGAAGATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGAAGAGTCAGGAAGGCTTTTCCAGCTTGCGCAGCATCTCGCCGACACGCTCGCCGAGCATTTCGTTGGCCGACAGCTTGAGGCCGCGCGCCAGTTCCAC CTGGACCACGTGTTCCGCCAGCGGACGCAGGCGCAGGAATACCTTGGCCAGCTCCTGCAGGTCCGGCGCCCCGGGCAGCAGGTCGGTGCCGCGGCCGTCC ACCAGGTGGGTGACGATCAGGCGGACGATCCCCGCCGCCAGGTGCTCGGTGTCGCTACGCAACTCGCCGAGGTGATCGAGCAACGCCTCCAGCGGGATGC CGCTGCGGTACAGCTCCAGCCCGGCCTGGAACAGCCGCGGACTGGGGATCTTCATGCACTCGCCGTCGAACAGCAGCAGGCCCAGCGCCTGGGCCTTGTC GATCACCCGGTCGTTCAGTTCGTCGCCGAAGATCGCCTGGAGTTCGTCGAAGCCGATGCTGCCGGGCGTCTCCAGGTTCCACTCGCCGATGATCGCCTGG
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| Amino Acid Sequence |
>LysR family transcriptional activator
MQQIHDLRRIDLNLLVVLDALLSERHVSRAAQRLAMSQPAVSHALGRLRELFGDPLLVRVKSRMQLTSLALELAPKLQASLDQVRGVIGGPAFEPVRSRR HFRLGMSDYGAWVVLPALLRQQQALAPGVSFGIVQEPRLETARQVAEGQLDCALGVFPLLPEGVRARRLFEERFVCVCRRSLFDRPDGLSLDRYLAARHV RVSLQDNPAEEVDSALEKRGLRRQVALTLPHFTVAPALLAGTDLVLTIAERILERLRLPEELAVCEPPLAIPRFDYVQIWRGDAEREAAGAWLREQIQAA ARKI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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