Pseudomonas aeruginosa UCBPP-PA14, PA14_18470 (algL)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0050896 response to stimulus
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3547
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8370530
Biological Process GO:0042121 alginic acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3547
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8550492
Molecular Function GO:0004794 L-threonine ammonia-lyase activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3547
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8370530
Biological Process GO:0042122 alginic acid catabolic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3547
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8370530
Molecular Function GO:0045135 poly(beta-D-mannuronate) lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042122 alginic acid catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00557
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other UCBPP-PA14 genes in this class
Secreted Factors (toxins, enzymes, alginate) Other UCBPP-PA14 genes in this class
Cell wall / LPS / capsule Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00051 Fructose and mannose metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00557 Alginate lyase [algL]. IPR022859 Alginate lyase 5 367 55.739719
CDD cd00244 AlgLyase IPR022859 Alginate lyase 24 361 0.0
Gene3D G3DSA:1.50.10.100 Chondroitin AC/alginate lyase IPR008929 Chondroitin AC/alginate lyase 28 362 0.0
SUPERFAMILY SSF48230 Chondroitin AC/alginate lyase IPR008929 Chondroitin AC/alginate lyase 30 361 1.46E-62
FunFam G3DSA:1.50.10.100:FF:000002 Alginate lyase - - 28 362 0.0
Pfam PF05426 Alginate lyase IPR008397 Alginate lyase domain 63 303 7.8E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.