Pseudomonas aeruginosa UCBPP-PA14, PA14_14280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 97 282 2.9E-44
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 8 66 2.2E-20
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 22 33 3.6E-7
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 90 286 3.8E-38
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 43 54 3.6E-7
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 33 43 3.6E-7
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 92 291 5.25E-43
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 4 88 4.3E-28
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 7 113 4.61E-22
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like - - 95 282 1.42959E-65
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 4 87 1.6E-21
Gene3D G3DSA:3.40.190.10 - - - 163 255 2.9E-44
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 5 293 2.1E-74

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.