Pseudomonas syringae pv. syringae B728a, Psyr_4096 (lpxC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B728a chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTCCTGACCTGTCTCTGGGTGAGTACTCGGACGTGGGTAGCATCATCGAAGCGTTCGCTTCCGAGCACGCGATGGTCAAGGTCGGTACTGTTATCGAT CCGGACATGCGTGACGAGTTGCACGTGACCGTGGTTGCCACCGGCCTGGGCGCGAAAATCGAGAAACCTGTCAAGGTCATCGACAACACGTTGCAGACCA CCCAGCAGGCTCCTGCACAGCAGGCGTCCCGCCAGGAAGCACCGTCGGTCAACTACCGTGACCTGGATCGTCCTACCGTGATGCGCAATCAGGCACACGC AGGCGCTACAGCCGCGGCGAAGATGAATCCCAACGATGATCTTGATTACCTGGACATCCCGGCTTTCCTGCGTCGTCAGGCCGATTGATGAAATGTATCA GGGGTATTAGGGTGATTGGTGTTCAGCAAAGGCATGGTCTGCTATCATCGCCAGCCTTTGTTGATACCAGTTCGCAACTTGCGCTGAAGCGGCCCATGCC
|
|
| DNA Sequence for Gene |
>Psyr_4096
|lpxC
ATGATTAAACAACGCACCCTGAAAAATATTATCCGTGCCACAGGTGTAGGCCTGCACTCCGGGGAGAAGGTTTACCTGACCCTCAAGCCCGCACCTGTGA ATACCGGCATTGTGTTTTGCCGAGCTGACCTTGACCCCGTCGTGCAGATCCCTGCGCGTGCGGAAAACGTCGGTGACACCACTCTGTCGACCACTCTGGT CAATGGTGATGTCAAAGTCGACACGGTAGAACACTTGCTCTCGGCCATGGCTGGCCTTGGCATCGATAACGCCTACGTCGAGCTCTCTGCCTCCGAAGTT CCTATCATGGACGGCAGCGCAGGCCCTTTCGTATTCCTGATTCAATCGGCAGGCCTGGAAGAACAGGACGCGCCGAAGAAATTCATCCGTATCCTGCGTG AAGTCACGGTGGAGGAGGGCGGTAAACGCGCTACCTTCGTGCCTTTCGAAGGGTTCAAGGTCAGTTTCGAGATCGATTTCGATCACCCCGTCTTCCGTGA CCGCACCCAGAGTGCAAGCGTGGACTTTTCCAGCACTTCCTTTGTGAAGGAAGTCAGCCGTGCCCGGACCTTCGGGTTCATGAGTGATATCGAGTACCTG CGCAAGCACAACCTCGCACTCGGCGGCAGCGTGGAAAACGCCATCGTGGTCGACAAGGACGGTGTACTGAACGAAGACGGCCTGCGTTACGAGGACGAAT TCGTCAAACACAAAATCCTCGACGCCATCGGTGACCTCTACCTGCTGGGCAACAGCCTGATAGGTGAGTTCCGGGGTTTCAAATCGGGGCATGCACTGAA CAACCGTCTGCTGCGCACGTTGATCGAGCAGAAAGACGCTTGGGAAGTGGTGACTTTCGAGGATGCCAGTACGGCACCAATTTCTTACATGCGCCCTGTC GCGGCCGTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAAGCTTTACTCTCTTTCCTTTTGTTCTTTAAAGGCTGCCCTCGGGTGGCCTTTTTTTATGGGTTTATTCAGGGGAAGTCAGTGTTCGTGGAGGCCTTG CAGCGATCAGGCAGGGTTACTTCCTGTCCTTTGCATGGCTGGCCAGTCGTTCAAGTGCGGCACGCAGGCGTGGATCGGTGATGCCTTCGGCGGTGGCCTG AATGTTTTCGGCAGCCACTGCCGACAGGTCGATCGTGTGCGTGGCCGCCCCGCGTGGCGCTTCAGGCGGCTGCACCTTGAACACAATGCGGGTCAGGTTG ATGAATTCGTCGAAGGCCATCATTTGCCGGTGCAGGCGTTTCTGCTGGTAGCGCAGGCGCGTGGCCCAGTGACCGTCCGTCACGATCAGCAACAAGGTGC CCTCGCGCCACGAGGCCACGCGACAATGCTCGCGAGCCGCAGGCTGCAGCTGGCTTTCGAGCAGGCGCTGCAGATGGCTGAGGCGTTCGGCGTGGCGAAA
|
|
| Amino Acid Sequence |
>UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVNTGIVFCRADLDPVVQIPARAENVGDTTLSTTLVNGDVKVDTVEHLLSAMAGLGIDNAYVELSASEV PIMDGSAGPFVFLIQSAGLEEQDAPKKFIRILREVTVEEGGKRATFVPFEGFKVSFEIDFDHPVFRDRTQSASVDFSSTSFVKEVSRARTFGFMSDIEYL RKHNLALGGSVENAIVVDKDGVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNRLLRTLIEQKDAWEVVTFEDASTAPISYMRPV AAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|