Pseudomonas syringae pv. syringae B728a, Psyr_4060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B728a chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTGCCGGCAACCCGTTGACCAGCGGCGACACCCCGCTGCTGACCTGCGATGTCTGGGAACACGCCTACTACATCGACTATCGCAACCTGCGTCCGAAG TACGTGGAAGCGTTCTGGAACCTGGTGAACTGGGACTTCGTGGCCAAGCAATTCGCCTCCTGAGTCCAGCGTCATCGAAAAACCCGGCCTAGCGTCGGGT TTTTTATGTTTTCCGGCCGGTAAAGCTCGCTCACCCGATGCCTGTTTCACAGACGGCGTCGAACACCCGCCTGCCAGTCAGGCGAATCGCAAATCTTTTT TCGCCTGCCGCTCGTACTTTGTGTATTGTCAGAAAACGCTAGCTGACTCGTGCCACAACGTAATTCTCTATGACGTAATTCTTTACAGTGTTCTGCTCAG GTTACCTAACTGGCCACCCGACGCATTGAGGTGGCTTTGGCCAGCAGGTGCAAGGAACGCGAAGATCAGCCAAGCGTACCGGTTGTGACAAGGTCACGGC
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| DNA Sequence for Gene |
>Psyr_4060
GTGCGGGCCTGGTTTTTCGAGGGTCATGAGGCGATATGCCCTCCGACACGAACTAAGGAACGGCCATTGAAGCTGGAACTCAAGAACAGCCTGTCGGTAA AGCTGCTGCGCGTTGTGCTGCTTTCGGCGCTTCTGGTGGGCGTCCTGCTCAGTTGTGCGCAAATCATCTTCGACGCCTACAAGACACGTCAGGCCGTGGC GAGCGATGCCGAGCGAATTCTCGGCATGTTCCGCGATCCTTCGACACAGGCCGTCTACAGCCTGGACCGCGAGATGGGCATGCAGGTCATCGAAGGCCTG TTCCAGGATGACTCGGTACGCATGGCGTCCATAGGGCACCCCAATGAAAGCCTGCTGGCCGAGAAAGACCGGCCGCTGAAAGACTCCCCCACCCGGTGGC TGACAGACCTCATCCTCGGCCAGGAGCGCAGCTTCACCACTCAACTGGTAGGCCGCAGCCCCTACAGCGAGTATTACGGCGACCTGCGCATCACTCTCGA CACTGCCAATTACGGCGAAAGCTTTCTGGTCAATGCCGGCATCATCTTTGTCGCCGGCGTGCTGCGTGCGCTGGCAATGGGGCTGGTGCTGTATCTGGTC TATCACTGGCTGCTGACCAAGCCGCTGTCAAAGATCATCGAGCACCTGATCGCGATCAACCCCGACCGCCCCAGCGAACACCAATTGCCGTTGCTCAAAG GCCACGAGAAAAACGAACTGGGGATCTGGGTCAACACCGCCAACCAATTGCTGGCCTCCATCGAGCGCCACACTTATCTGCGCCATGAGGCCGAGAACAA TCTGCAGCGCATGGCGCAATACGATTTCCTCACCGGTCTGCCCAATCGACTTCAGTTGCAGACCGGGCTGGACAGGATTCTGGAAGATGCGGGGCGCCAG CAACACAGAGTGGCGGTTCTTTGCGTGGGTCTGGATGACTTCAAGGGCATCAACGAACAGTTCAGCTACCAGTCCGGCGATCAATTACTGCTCGCACTCG CTGACCGCCTGCGCGCGCACAGCGTACTGCTCGGCGCACTGGCGCGCCTGGGCGGCGACCAGTTCGCGCTGGTTCAGTCCAACATCGAACAGCCCTACGA GGCAGCAGAGCTGGCGCAGAATATTCTCGATGAGCTGGAGGCACCGTTCATTGTCGGTGACCAGCAGATTCGACTGCGGGCAACCATCGGCATCACGCTG TTTCCCGAAGACGGCGACAGCACCGAGAAACTGCTGCAGAAAGCCGAGCAGACCATGACGCTGGCCAAAGCCCGCTCGCGTAACCGGTATCAGTTCTACA TCGCCAGCGTGGACAGCGAAATGCGCCGCCGCCGCGAACTTGAAAAAGACCTGCGCGAAGCCTTGCCACGCAATCAGCTGTACCTGGTCTATCAACCGCA GATCAGCTACCGCGATCACCGTATCGTCGGAGTGGAAGCACTGATCCGCTGGCAGCATCCGGAGCATGGCCTGGTGCCGCCGGACGTATTCATCCCGCTG GCCGAACAGAACGGCACGATCATCGTCATCGGAGAGTGGGTGCTGGATCAGGCCTGCCGTCAGCTGCGCGAATGGCTCGATCAGGGTTTCACCGATTTGC GCATGGCCGTCAACCTGTCGACCGTGCAGCTGCATCACGCGGAACTGCCCCGCGTGGTCAACAACCTGCTGCAGATCTATCGCTTGCCACTGCGCAGCCT GGAACTGGAAGTGACCGAAACCGGGCTGATGGAAGATATCAACACCGCCGCCCAGCACCTGTTGAGCTTGCGACGCTCCGGCGCCTTGATTGCCATCGAT GACTTCGGCACCGGCTACTCATCGCTGAGTTACCTGAAAAGCCTGCCGCTGGACAAGATCAAGATTGACCGCAGCTTCGTGCAGGACCTGATCGATGACG ACGATGACGCTACTATCGTGCGAGCCATTATCCAGCTGGGCAAAAGCCTGGGCATGCAAGTGATTGCCGAAGGTGTGGAGACCGTCGAGCAGGAGGCCTA TGTCGTGACCGAGGGCTGTCACGAAGGCCAGGGCTATCTGTACAGCAAGCCGCTGCCGGGTCGCGAACTGCTGGCTTATCTCAAGCAGTCGCGTCAGGAC CACGCCGCCAGTCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGATTTGCATGCTCCCGGCCATTCATCTCATCTTGAAACCGACTGTTACAACCTGCCGAATGCCTGAACACGCCCACACAGGCGTTTTGCCTTTACAT CGAATGCAAATCTTTCGCATTATGTCGCAGATTTTATGGGCGCACCCCCGCCATCACCTTTATCGACGCAGGATTCCGTCATGATTCGTATGCCTCTGGC AACCGCTAGTCTGTTGGCCATCGCTATCTCTCTCGCCGGTTGTGGCGAAGGCAAGGACAAGGCTGCCGCACCGGCTCCCGCGCCAGCCGCTGCTCCCGCG CCAGCCGCTGCTCCGGCGACGCCGGCTGCGACGCCTGCTGCTCCTGCTCCGGCAGCCGCCGCCCAGACTGACGACGCGGCGGCCAAGGCTGTGGTCGCGA ACTACGCCAACATGGTGTCCGCCGTGTTCGACGATGCCGAGGCCGGCGCGAAAAAACTCAGCACGGCCGTCGACGCCTTCCTGGCCAAACCCAACGATGA
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| Amino Acid Sequence |
>diguanylate cyclase
MRAWFFEGHEAICPPTRTKERPLKLELKNSLSVKLLRVVLLSALLVGVLLSCAQIIFDAYKTRQAVASDAERILGMFRDPSTQAVYSLDREMGMQVIEGL FQDDSVRMASIGHPNESLLAEKDRPLKDSPTRWLTDLILGQERSFTTQLVGRSPYSEYYGDLRITLDTANYGESFLVNAGIIFVAGVLRALAMGLVLYLV YHWLLTKPLSKIIEHLIAINPDRPSEHQLPLLKGHEKNELGIWVNTANQLLASIERHTYLRHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQ QHRVAVLCVGLDDFKGINEQFSYQSGDQLLLALADRLRAHSVLLGALARLGGDQFALVQSNIEQPYEAAELAQNILDELEAPFIVGDQQIRLRATIGITL FPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIPL AEQNGTIIVIGEWVLDQACRQLREWLDQGFTDLRMAVNLSTVQLHHAELPRVVNNLLQIYRLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAID DFGTGYSSLSYLKSLPLDKIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQGYLYSKPLPGRELLAYLKQSRQD HAASL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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