Pseudomonas simiae WCS417, PS417_RS00605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain WCS417. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCCTTGGCATCACGCTCCAATTGCAGAAATTGCGCGTCATATTCCATGTCTTCGCCACAAGGCGAAGTCGCGGAAACGGCGGTGAGCAGCAACGGCAC ATCCACTGAATTTGATCTCCCTATCAGCCCGTTAGATGGCGGGCAATTCATGCATTAGTTGCGCGAGGAACTTTGCATGTTTTCTTGGTCATATAAGCAA GATGCCACTAATGTGCCATCACTGGTATTCAAGAAGTTGTGCATTTTTGGTGTAGTACTTAGGGCTTGTCAAGGTAAGCTATTCGCCCTCTGTGACAGAT GTGCGGTGCTTAACAACCTGCGCGACTGGTGGGTCGAACGACGCACCGGGACAGGATTTTTGTCATAGAGCCCAGTTAAGATCAGCGATCATGCTGGTAT TGACAGGTTTTGGACGGTCGATTGCTCGACCTGATGGGGATACCCCGGGAAGCGCTGTTCCGGGAATCGACCGCGCGCGAAGTATCAGCAAGGAGGCAAG
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| DNA Sequence for Gene |
>PS417_RS00605
ATGTCGCTGTGCTTGACTATCACTAGTTATCACAAGATTACCCCTGGGCAGTGCTCCGAAAAGTCCATGAATCAGGGCGCGATGGCTATCGGCCGCAGCT CGGATAATGACTGGGTATTGCCTGATCCAGAGCGCCTGGTGTCCTCGCAACATTGCGTTATTCAATACAAAGATGGCCGCTATTATTTAACCGATAACAG CACAAATGGTGTGGAGTTGGTTAAAGCCGGTATTCGTATGCGCCGGGGTAATAGTGAACTGTTGCAAGATGGTGAACTGATCCGCATCGGCGATTACGAG ATCCAGGCGCGCATCGACTTCAACGTGCAATCCATCGACAGTCAGCCGTTTACCGGCGATGCACCGAACAGTTTTGAAGCGCTGATGGGCGCTGTGGTGA ACACGCCCGCGCCCGTCGCCACGCCGGTGATTGCGCCGCAGTTCCAGGGAGCGTCCTCGATGGACACGCTGCCGGACCTGTTTGATTTCCTCAGCCCCAC TGCCGTGCCGCCACCGACGGTGCCGGACCACGTGCCTTCCGAGCAACACGACTTCCGCCCGCCGACGCCGGTCGCGATGCCTGTGGCCGAGCCGCCTGTG GTATCGGGCGCGGTGATCCCCGAAGACTGGGACCTGTTTGGCGATGCGCCTGCGCCTGTCGTCAGTGCTCCACCACTGCCGACGCCACAGCCAGTCACCC CGCCGCCACCCGTGGTCGAGTCCATGCTCCCCGTGGCAGACAGCCAACAACCCGACCTCCTGCAAGCCTTCCTGCGCGGCGCTGGCCTGGACCAATTGCG CCTGGACAAAGCCCAGGCCGAGGCCCAGATGGAAAGCATCGGCCGAAGCTACCGCCTGATGGTCGAAGGCCTGATCGACGTGTTGCGTGCCCGCGCCAGC CTCAAGGGCGAGTTCCGCATGCAGCAGACGATGATTCAGCCTGCGGAAAACAATCCGTTGAAATTTGCCCCCAATGCTGATGAAGCGTTGCTGCTTTTGC TGCGTCACGGTAACCAAGCGTTTATGGCACCGGACCTCGCCGTGCGCGACAGTTTCAACGACTTGCGTGCCCACCAGTTGGCGGTGATGGCCGGCGTGGA AGCGGCCATCAAGCACTTGCTCAGCCGATTCGAACCGGCGCAATTGGAAGAACGCATGGGCAAGCCTGGCGGGCTGTCGAGCCTTTTCAATGGCTCGCGC CAGGCGCAGTACTGGCAACAGTTCACCGAGCTCTACAGCAATATTTCCCGCGAGGCCCAGGAAGACTTCCAGGACCTGTTCGGCCGTGAATTCAGCCGGG CCTACGAAGAGCACAGCGCACGACAGCGTCGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACCGCGCCGCAACACATGGATTAACGGATAGCTAAGTACGTCATTGAGGACGCAGGATGATTCCCAGGTTTTTACTCGCAGCCGCCACCTTGCTGCTGC TGACGGCGTGTGCCAAAGACGCCGCCAAACCCGAAACCACCGCCGAGGCCGAAGCGGATACGGCTGCCGTCGAGCTGCACTTTCACGCGATCAGCGGGCT CAACCCCGGCGCCAACGGCCAGGCCGCCCCGGTGCGGGTGCGCATCTTCGAACTGAAAAACGCCGCCACCTTCGCCCGCTCCGATTACTTCGCATTGGCC GACCGCGCCCAATCCACCCTTGGCCTGGACCTGCTGGACCAGGATGAAGTGATGGTGCAACCCGGCGAGCAACTGACCATCCAGCGCGATCTCGACCCGT CCACGCGCCAGATCGGTTTGCTCGTGGGCTATCGCGAGTTGGACCGCGCGCAGTGGCGCACGGTGATCAATGTGCCCGCGCGCCAATACACCGAATACCA
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| Amino Acid Sequence |
>type VI secretion protein
MSLCLTITSYHKITPGQCSEKSMNQGAMAIGRSSDNDWVLPDPERLVSSQHCVIQYKDGRYYLTDNSTNGVELVKAGIRMRRGNSELLQDGELIRIGDYE IQARIDFNVQSIDSQPFTGDAPNSFEALMGAVVNTPAPVATPVIAPQFQGASSMDTLPDLFDFLSPTAVPPPTVPDHVPSEQHDFRPPTPVAMPVAEPPV VSGAVIPEDWDLFGDAPAPVVSAPPLPTPQPVTPPPPVVESMLPVADSQQPDLLQAFLRGAGLDQLRLDKAQAEAQMESIGRSYRLMVEGLIDVLRARAS LKGEFRMQQTMIQPAENNPLKFAPNADEALLLLLRHGNQAFMAPDLAVRDSFNDLRAHQLAVMAGVEAAIKHLLSRFEPAQLEERMGKPGGLSSLFNGSR QAQYWQQFTELYSNISREAQEDFQDLFGREFSRAYEEHSARQRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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