Pseudomonas simiae WCS417, PS417_RS00650
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain WCS417. [Details] | |
| DNA Sequence Upstream of Gene |
ATAGCCGGGCTGTGGCACGGCGATCAGCAATCCACCCTGGCCGCGCTGCGTAGCCAGCATCTGGGGTATGTGCTGCAAACCGGCGGTCTGCTGGGGTTTC TCGATGTGCGCGGCAATATCGCGTTGTCCCGGCAACTGTTGGGTTTGAAGGACGATGGCAGCGTGGCGCGCCTGGCCGAGCAGTTGGAGATCAGCGACCA GTTGACCAAGAAGCCGACGGCGCTTTCGGTGGGCCAACGCCAACGCGTCAGCTGTGCCCGCGCCCTGGCCCATGCGCCACAACTGGTGCTGGCGGATGAA CCGACGGCGTCCCTCGACCCCTTGAATGCCGAGCGCGTGATGCAGGCGTTGCTGGCCCAGGCTCGCGAACACCGTGCGGCGTGTGTGATCGCTACCCATG ATGAACCCCTGGCCCGCGCCAGTGGCTTGCAGGTGCGGCGCATCAGTTGCCGTCGCGACGCCGATGGCGGCGTTACGGCGACCCTCGGGGAGGTGTGCTG
|
|
| DNA Sequence for Gene |
>PS417_RS00650
ATGCGCATCGGTCTGGTGGCGTCGCTGGCCTGGCAGGACTATCGCAACGATGCCTGGCTGTCCGCCTGTTCGGTGCTGGCGCTGGTCGCCGTCATCGCAC CGTTGTTGGTGTTATTCGGCCTGAAATTTGGACTGGTTAGCAGTTTGACCGAACGTTTGCAGACCGACCCCGCCACCCGTGAAATTATTCCGCTGGGCGG TGGTCGATTCAGCAGCGCCTTTATCGAGCAGCTCGGTCAGCGCAACGATGTGGCATTCGCGCTGCCGCGTACGCGGCAGATTGCGGCGACCGCGCAGGTG GGCACGCTGGTCCTGGAGATGCTACCGACCGCCTCGGGTGACCCGTTGCTGGCCGGCCTGCCGGTGCCGCAGGGCCTGGGTCAGATCGTGCTGAGCCACA CCGCCGCCGAGAAGCTTGCGGCGCGGCCAGGGGATTGGCTGGAAACCAGCTTTGCACGGCAAGTGGCGGGACGCGTGGAAGCCCAACGCACGCGCTTGCA GGTGCTGGCGGTATTGCCGTTGGAAGCCTTTGCCCGTGACGGCTTGTTTGCCGATCTGAAACTGCTGGAAGGGGCGGAAGACTACCGCGACGGTCGTGCA GTGCCCGCGTTGGGTTGGAGCGGTGAGGCGGTGGGGACGAATGAGCAGCGGGTTTACCCGGCGTTTCGCTTGTATGCCCGTAACCTCACTGATGTGGAGC CGCTGCGGGTGTACTTCGCGGGGCAGAATTTATTAGTGTCGACCCAGGCACAGACCATCGCGCAGGTGCAGTCGTTGAGCCGCAACCTGTCGATCGTGTT CTGGGTGATCTGCGGCTTGGCGTTGGCGGGGGCGTTTGCGGCGATCTTTGCCGGGGCCCTGGCCGCCGTCGCGCGCAAGCGGCGGGAATTGTCGGTGCTG CGCCTGCTGGGGTTTTCCACGGGCGGGCTGCTGTTGTTCGTGGTGGTGCAGGCGCTGTACAGCGCAGGGTTTGCTGCCGTGCTCGGTGCTGGGCTGTATG GCGTGGCCGAGGCGGCGTTGAATAAGCTTTTTGTGCAGGTGCCGGGCGAATACGCCAGCCACCTGTTGGCGCGTCATTACGGCCTGGCCCTGATTGCAGT CATGGGCGTCAGCGCCGTGGCGGCGGCCTGTGGTGGTTGGCGAGTGGCGCGGATCCAGGCTTCTGAAGGAATCAGAGATGTTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTTACTGGGCGCCTGTGTGGCGCTGAGCCTGGCCTCAATGGCCTGGGCCGACGAGGCAAGCGACAAGCTCGACAATCCCAAGCCGTTGGAAGGCGACGTC AGCCTGCCGCTGCCGTGCGAAGGCAACATGGTGTTCCGCTATGCCTATGTGCTGGCCCAGGGCTCCCTGGACGACCGCGAAATCAACCTCGGCTACCCCT TTGCCGAAGGCGAGGCGGGCTATCAGCAGTCGTTTATTTCCGGCTACCGCCGCGACTTCATCAATGGCCAGTTCACCCTCAAGGATCTCCCGAAAGACTG GAACAAAGTCATCGCGCCGTTGATGCCGAAGACCGACGCCAAGACCCCGCTCAAGCCCATGTTGTACTTCATCGGCAAGTACGAAGTGACCGCACGCCAG TACGCCCAGGTGATGTCCCAGGCCCAGTCGCTGGCCAGCGGTGAACCCGCGCCTGCGTGCGATGCGCCCACCGGCATGGCCGCGCGCTTGCCCAAGGTGA
|
|
| Amino Acid Sequence |
>membrane protein
MRIGLVASLAWQDYRNDAWLSACSVLALVAVIAPLLVLFGLKFGLVSSLTERLQTDPATREIIPLGGGRFSSAFIEQLGQRNDVAFALPRTRQIAATAQV GTLVLEMLPTASGDPLLAGLPVPQGLGQIVLSHTAAEKLAARPGDWLETSFARQVAGRVEAQRTRLQVLAVLPLEAFARDGLFADLKLLEGAEDYRDGRA VPALGWSGEAVGTNEQRVYPAFRLYARNLTDVEPLRVYFAGQNLLVSTQAQTIAQVQSLSRNLSIVFWVICGLALAGAFAAIFAGALAAVARKRRELSVL RLLGFSTGGLLLFVVVQALYSAGFAAVLGAGLYGVAEAALNKLFVQVPGEYASHLLARHYGLALIAVMGVSAVAAACGGWRVARIQASEGIRDV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|