Pseudomonas simiae WCS417, PS417_RS01980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain WCS417. [Details] | |
| DNA Sequence Upstream of Gene |
CACGGAGCCCTCGGTTTTACCCTGGCCTGTGGCAGCGGCCAGCTGCTGGCCGAGTTGATTGGCCAACACGCGCCTTCTATTGATATGCAGGGCCTGGCAC CCCGCGCCGCATGAGGATGTCTGCATGACTATCACCCGCATCAGCAGTAACGAGCGTCTTTCGGGCGCAGTGACGTTCAACGACTTGGTGTTCCTCTCGG GCCAGGTGCCCGGCGATGGTCTGGACGTGGCGACACAAACCCGTGAAGTGCTGGCCAGGATCGATGCGTTGCTGGCCCAGGCGGGCAGCGACAAGGATCA TCTGCTCAACGCCACGATTTACCTGAAAGACATCAGTGAAGGTTTCGCACCGATGAATGAAGTGTGGTCAGCCTGGCTGTCACCGGGTTTAGCGCCGACG CGCACCACGGTGCAGGCAGAACTGGCGCGACCGAGTGTATGGGTGGAAATCAGTGTGATCGCTGTACGTAAATGACTTCAAAGACCAACGGAGAATAACA
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| DNA Sequence for Gene |
>PS417_RS01980
ATGAAAAAGATCCTGTTGACCGGCTGCACCCTGGGACTCTTGCTGGGCGCACAAGCCCATGCGAATCAAGCACCGCTGGACGGCACGCTGGGCAAGATCG CCAGCGCCAAGTCCATTACCTTGGGCTATCGCGATGCGTCGGTGCCGTTTTCCTACGTGGGGGATAACAGTGGCAAGCCCATGGGCTATTCGGTGGAGCT GGCGAGCAAGATTGTCGAGCGCATCCAGCAGAAAACCGGCGTGGCCACGCTTAATGTGAAATACAACCTGGTGACGTCCCAGACCCGCATCCCCTTGGTG CAGAACGGTACCGTCGACCTGGAATGCGGTTCCACCGGCGTAACCGCCGAGCGGCAGAAGCAGGTGGCGTTTTCCTACGGGTTTATCTACGTGAAGGGGC AATTGCTCACGGCCAAGGACAGCGGTATCAAAGGCTTTCCCGACCTGGCAGGCAAGAACGTGGTGACCACCGCCGGCACCACCAACGAGCGCTTCCTCAA AAGCTACAACGCCGAGCACAAGACCAACATGTTCGTGATCAGCGCCAAGGATCACGGTGAGGCGTTCAAGATGCTGGAGACCGGTCGCGCTGCGGCCTTT TACATGGATGACGCGTTGCTCTATGGCGAGCGGGCCAAGGCCAAGGACCCGCATAACTGGGTGGTGGTGGGCGAGGAGCAATCGCGGGAAATCTACAGCT GCATGTTGCGCAAGGACGACCCGCAGTTTCTTGCGGTGGTCAACGAGACACTTGGCGACCTTTACCGCAGTGGGGAGATCAACGGGATTTACCAGCGCTG GTTCGAATCACCCATTCCGCCCAAGGGCTTGAACCTGGAATTCCCGATGACCCGTGAGTTGAAGGCGATTATCGCCAAGCCCATCAGTGATCCGGTGGAG TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCTAGAAGTCGCCCCACAACTGTTGGGCGACGGCCAACGCCACCACCGGTGCCGTTTCGGTGCGCAATACACGCGGGCCGAGGCGGGCGGCGTGGTAG CCGGCGGCTTGCGCAGTGTCGACTTCCAGGTCGGTCAGCCCACCCTCAGGGCCGATCAGGAAAGCCAGGCTCGATGGCTTGGCATGGCTGACCATCGGCT CGGCCACGGGGTGCAGCACCAGCTTCAAGTCCGCTTGGGTCTGTTTCAACCAGTCTACCAACAGCAGCGGCGGATGAATCACCGGCACCGTGGAGCGCCC GCATTGTTCACATGCACTGATCGCCACCTGGCGCCAGTGCTGCAGGCGTTTGTCGGCGCGTTCGTCCTTGAGGCGCACCTCGCAGCGATCGCTGAAAATC GGGGTGATTTCGCTGACGCCCAACTCGGTGGCTTTCTGGATCGCCCAATCCATCCGTTCGCCACGGGACAGGCCCTGGCCCAGGTGAATGCGCAGTGGCG
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| Amino Acid Sequence |
>ABC transporter
MKKILLTGCTLGLLLGAQAHANQAPLDGTLGKIASAKSITLGYRDASVPFSYVGDNSGKPMGYSVELASKIVERIQQKTGVATLNVKYNLVTSQTRIPLV QNGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTAKDSGIKGFPDLAGKNVVTTAGTTNERFLKSYNAEHKTNMFVISAKDHGEAFKMLETGRAAAF YMDDALLYGERAKAKDPHNWVVVGEEQSREIYSCMLRKDDPQFLAVVNETLGDLYRSGEINGIYQRWFESPIPPKGLNLEFPMTRELKAIIAKPISDPVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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