Pseudomonas simiae WCS417, PS417_RS02170
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain WCS417. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGCCACCTTTTGGGTGGAAGACGGCGAGATCAAGGCGCCGGTCAGCACCATGCGCTTTGATGACAGCGTCTACCACCTGCTCGGCACGCAGTTGGAAG CCCTGACCGCTGAACGGGAACTGCTGCTGTCGGCCAGCACTTACAGCCAGCGCAACACCGCCTCCAACCTGCTGCCGGGGGCTTTGGTAAAACGCCTGAC GCTAACCCTTTAACCACCACTATCCCCTGTGGGAGCGGGCTTGCTCGCGAATACGGTGCATCAGTCACACATGTACTGACTGACACTGCGCATTCGCGAG CAAGCCCGCTCCCACAGGGGCTGTGTCAGCTTCTGACATCTCGGTTCCATCCTCTCCTACGGTCAATTCTCTTCTTCCCATTCCGTGGGGCAGCCTGTTG TCGCCTGTAAAAAACCTCGATATAACGGTTAGTGGCATCCCGCCACCCGACAGGTAGTACTGCATGCACTTGCCCGGGAAGGGCAAGCTGGAGCGTTGAC
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| DNA Sequence for Gene |
>PS417_RS02170
ATGAACCATGGAAGTTTTGTCATTGAAAAGCTGTTCAAGCACTACAACGTTCATGTTGAGCAGCTAGGAAACGATTCTGCAAAAAAGACCGTCTTGATGG TCAACGGCGCGCTGTCCACCACGCGCTCGTTCGCTCGCACCAGTAAATGCCTGGCAGAGCATTTCAATGTGCTGCTGTTCGACCTGCCGTTCTCCGGCTA TTCCCGCGAACACAACACTGACCTCGACCTGGTAACCAAGGACGACGAGGTGCACATGCTGCGCGCCCTGGTCGAGCGTTTCCAGGTCAACCACCTGGTG TCGGCCTCCTGGGGTGGTATCTCGACGCTGCTGACCCTGGCGCACAACCCACCCTCCATCGAAAGCTCGGTGGTGATGGCCCTGGCACCCAACCTCAATC AGGCCATGCTCGACTACGTGGAACGTGTGCGCGTGCTGATCGAAGCGGATGACAAATCTGCCGTCGGCCACTTGCTCAATGAAACCGTGGGCAAATACTT GTCGCCCCGGCTCAAACGCAACAACCACCGTCACCTGTCGACCATGGCCACCACCGAGTACCGCCAGGCGCGTTTCCATATCCACCAGGTACTGGCCTTG GGCGATGGCAACTACCTGCCGGCACTGCGGCAGATTGAAACGCCAGTGCACTTCCTCAACGGCGCGCTGGACGAATACACCCCCGCCGCCGAGGCCCAGT TGTTCAAGCAGTACGTGGGGCGCAGCAGCTTTGCCGTGGCCGAGCAGACGGGCCACTTGCTCGACCTTGAATCCAACGAAGCCGCCGTAGCGGTGCACCG TGAGCTGCTGGATTTCCTGGTGGGAAAACACGCGACGGTTGGCGCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCAAACACATAGCCTGCTATCAAAAAGGTATTCCATGCCGAACCGCGTCCCGCTTGATGCCAAGACCGCCCGCTGGCTCCCCTGGGTGGTCGCGATTG CCTTCTTCATGCAGTCGCTGGACGGGACGATCCTCAATACGGCACTGCCGGCGATGGCACGGGACCTCGCAGAGAACCCATTGCGCATGCAAGGGGTGGT GATCGCCTACATGCTCACCGTCGCCTTGCTGATCCCGGCGTCGGGCTGGATCGCTGACCGCTTCGGCACCAAGAAAATCTTCTTTGGCGCCATCATGCTG TTCAGCATTGGCTCGCTGCTGTGCGCCCTGTCCAGCAGCCTGACCATGCTGGTGGGCGCACGGGTGATCCAAGGCCTGGGCGGTGCGCTGATGCTGCCCG TCGGGCGACTGGTGGTGCTGCGCGCCTACCCCCGCTCCGAACTGGTGCGCATCATGGGCTTCATCACCATCCCCGGCTTGCTCGGCCCGTTGCTCGGCCC
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| Amino Acid Sequence |
>rhamnosyltransferase
MNHGSFVIEKLFKHYNVHVEQLGNDSAKKTVLMVNGALSTTRSFARTSKCLAEHFNVLLFDLPFSGYSREHNTDLDLVTKDDEVHMLRALVERFQVNHLV SASWGGISTLLTLAHNPPSIESSVVMALAPNLNQAMLDYVERVRVLIEADDKSAVGHLLNETVGKYLSPRLKRNNHRHLSTMATTEYRQARFHIHQVLAL GDGNYLPALRQIETPVHFLNGALDEYTPAAEAQLFKQYVGRSSFAVAEQTGHLLDLESNEAAVAVHRELLDFLVGKHATVGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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