Pseudomonas simiae WCS417, PS417_RS22955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain WCS417. [Details] | |
| DNA Sequence Upstream of Gene |
GGCAACAACCTGCGCCAGAACTCCCGTGCCCTGGGCCTGGGTATGCGTCGGTTGGGCCTGTTCACCAGCATCGTGTTGTTCGACCAGCGCGTCTCGATGT GGACCTCCCTGCTCGGCCTGACCGTGGCAATTATCGCCACCTTCAAGTACGGCGGCGCGTTCATCCTCGCGTACCTGCTGTGGATCGGCATCACCCGTCT GATTCTGACCCTGCTGCTGTCGTGCTCCGGCCACAAGATCGGCCCGGCGTACCCGGTGATTCTCTATTACAACCAGATCATGGGCGCGCTGGTGAAGATC TACGTGTTCTTCCGCCTTGATCAACAGTCCTGGACCCGCCAGGACACCAAACTGACCCGCGATTTGGCCAGCTTTCAACGTTGGTTCAACACCTGGTCGT CTCGGACCATGACCTTCTCCGCCGGCAGCATTTTCGTCGCCGTGTTGCTGATGATGGTCTGACCCTGCCAAGCCTGAATTAACCAAGGAATTACACCGTC
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| DNA Sequence for Gene |
>PS417_RS22955
ATGAACAGCCAAGTAAACGCCAACGTTGTCCACGAATCCGAAGCCCAGCGCCAACATGCCCGGGTAAAAATCCCGGCCAAGCTGCGCTTCTTCAACACCG ACCGCACCCAGACCGAAGCACGGGTCATCGACCTGTCGGCCGGCGGCCTGGCGTTCACCGCCACGCAGCCGCTGACCGTGGGGGAAGTGCACAAGGGTCG CCTGCAATTCGTCATCGACAACCTCGGCCTGGCCATGGATGTGGAGTTGCAGATCCGCTCCTACGATCGCCAGAGCGGCCGTACCGGTTGCCAGTTCCAG AACCTCGACGCTCAGGACATTTCCACCCTGCGCCACCTGATCACCTCGCACCTGTCCGGTGACATCGTGACCATGGGCGACGTGCTGGCGACCCTGCAAC GCGACAACTTCACCAAGGCGCGCAAGGTCAAGGACGGCGGCAGCAACATGAGCGCCTTCGGCCGCCTGCGCGCCGTGACGTTCAGCCTGGCGATCTTCCT AGTCGGCCTCGCCGCGTTCGGTTTTGTCTTCAAGTCGATCTACGGCATGTACTTCGTCAGCCACGCCCAGGCAGGCCTGGTCAACGTACCCGGCATGAAC GTGACCATGCCGCGCGACGGCACTGTGCAAAGCCTGCTCAAGGGTGACGGGATCGCTGCCAAAGGCGCGCCATTGGCGACCTTCAGCACCAGCATGCTGG ACGTGCTCAAGGGTCACCTGGACGAAGACCAACTGCAACCGGCCAAGGTTGAAGAGCTGTTCGGCAAGCAAATGACCGGCACCCTGACGTCGCCCTGCGA TTGCGTGGTGGCCCAGCAAATGGTCGCGGACGGTCAGTACGCCAACAAAGGTGATGTGATCTTCCAACTGGTGCCGCGCGGCAGCCTCGCCAATGTTGAA GCGCGCTTCACCTATCGCCAGTTCGCCGACGTTCGCCCAGGTACACCGGTGAGCTTCCAGGTGGCCGACGAAGAACAGATCCGTACCGGCACCATCGTCA GCAGCACCAGCCTGAACAGCGCCGACCTGTCCTCCGACATTCGCGTGCAGATCAAGCCTGACGCACCGCTGGACAGCACCTACGCCGGTCGCCCGGTGGA AGTGACCAGCGACCGTGGCCCGTCCCTGAACTGGCTGATCGATAAAGCCATGGCCCACGGTCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAGGACATGCCTGTGACGACTTTCTCAAAAACACCGCAATCCCTGTGGGAGCGGGCTTGCTCGCGAAAGCAGTGTGTCAGCCAGCACATGCATCAACT GACAGGGCCCCTTCGCGAACAAGCCCGCTCCCACATGGGTACTGCGGCGTTGCTAGCTGTTGCAGTCAGCCTCGCCGGTTGCGCCGGCCTGCCCGACCAA CGCCTGGCTAACGAAGCGTTGAAACGTGGCGACACCGTCACCGCCCAGCAGAATTACCAGCAACTGGCAGACCTGGGTTACAGCGAGGCCCAGGTGGGCC TGGCTGACATCCAGGTCGGCACCCGCGATCCGGCGCAAATCAAACAGGCTGAAGCCACCTACCGCGCCGCGGCGGACACTTCGCCCCGCGCCCAGGCCCG TCTCGGTCGCCTGCTGGTGGCCAAGCCTGGCAGCACCGAAGCCGAACACCATGAAGCCGAAGGCCTGCTGAAAAAAGCCTTTGCCAATGGCGAAGGCAAC
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| Amino Acid Sequence |
>hemolysin D
MNSQVNANVVHESEAQRQHARVKIPAKLRFFNTDRTQTEARVIDLSAGGLAFTATQPLTVGEVHKGRLQFVIDNLGLAMDVELQIRSYDRQSGRTGCQFQ NLDAQDISTLRHLITSHLSGDIVTMGDVLATLQRDNFTKARKVKDGGSNMSAFGRLRAVTFSLAIFLVGLAAFGFVFKSIYGMYFVSHAQAGLVNVPGMN VTMPRDGTVQSLLKGDGIAAKGAPLATFSTSMLDVLKGHLDEDQLQPAKVEELFGKQMTGTLTSPCDCVVAQQMVADGQYANKGDVIFQLVPRGSLANVE ARFTYRQFADVRPGTPVSFQVADEEQIRTGTIVSSTSLNSADLSSDIRVQIKPDAPLDSTYAGRPVEVTSDRGPSLNWLIDKAMAHGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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