Pseudomonas syringae pv. syringae B728a, Psyr_3178 (lolA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B728a chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAACAGCTGTTGGGCCACGGCGATATGCTGTACATGCCGCCAGGCACCAGCCTGCCGATTCGTGTGCATGGCGCGTTCGTTTCCGACGAAGAAGTGCATC GTGTGGTAGAAGCCTGGAAGTTGCGAGGTTCCCCGGACTACAACGACGATATTCTCGCTGGCGTCGAAGAGCCCGGCAGCGGCTTTGATGGCGGTAGTGG CGAGGGCAGTGAAGACAGCGAAAGCGACGCGCTTTACGATGAGGCCGTCAAGTTTGTGCTGGAAAGCCGCCGTGCATCGATTTCCGCCGTACAGCGCAAG CTGAAGATCGGCTATAACCGCGCAGCACGCATGATCGAAGCGATGGAAATGGCAGGGGTCGTGACCTCCATGAATACCAACGGTTCGCGTGAAGTCCTGG CCCCCGGGCCGGTGCGCGACTGATTTTTTACCACCCCGTATTGCGGCGACGGCGTGCACGCCACGCCGTCGCATCATCATCGACTTCAAAGAGGAATCCA
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| DNA Sequence for Gene |
>Psyr_3178
|lolA
ATGCGCCTTATCCGCATGCTGTTGGCCACCGCACTGACCTTCTCCATGATCCCCGCCCATGCCGACAGCAAGGACGTGGCGCGCCTGACCCAGTTGCTGG AGAAATCCCAGACCCTGACCGCCCGCTTCTCGCAACTGACGCTGGATGGTGGCGGTACCCAGTTGCAGGAAACCACCGGCGAAATGGCCCTGCAGCGCCC CGGCTTGTTCAACTGGCACACCGATGCGCCACAGGAACAGTTGATGGTCTCGGACGGCAAGAAAGTTTCGCTGTGGGACCCTGATCTGGAGCAGGTCACG ATCAAGAAACTCGATCAGCGCCTGACCCAGACTCCAGCCTTGCTGCTGTCCGGTGACGTATCGAAGATCAGCGAAAGCTTCGACATCACCGCGAAAGAAG CAGGTGGCGTGATCGATTTCACGCTCAAGCCCAAAACCAAGGACACGCTGTTCGACAGCCTGCGCCTGTCGTTTCGCAACGGCATCATCAACGACATGCA GTTGATCGACAGCGTCGGGCAGCGCACCAATATCCTGTTCACCGGGGTCAAGGCCAACGAGTCGATCGCAGCCAGCAAGTTTCAGTTCCAGATTCCCAAG GGCGCTGATGTCATTCAAGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGGCCGATTTCTGACCATGGATTTGTTCAGCCGCGAACCGATAGCCCAGCCTCTGGCTGCACGTTTGCGTGCTACCAACCTGGATGAATATGTCGGTC AGGAACATGTACTTGCCCACGGCAAGCCTCTGCGTGAGGCGCTGGAGCAAGGCGCACTGCACTCGATGATTTTCTGGGGGCCGCCCGGCGTGGGCAAGAC CACCCTGGCGAAGCTGCTGGCCAAGGTGTCGGACGCGCACTTCGAGACGGTTTCGGCGGTGCTCGCCGGGGTCAAGGAAATCCGTCAGGCAGTGGAAGTG GCCAGGCAGCAGGCCGGACAGTACGGCAAGCGCACCATCCTGTTCGTTGACGAAGTGCACCGCTTCAACAAGTCACAGCAGGACGCCTTCCTGCCTTACG TCGAGGACGGTACGCTGATCTTTATCGGCGCGACCACCGAAAACCCCTCGTTCGAACTCAACAACGCCTTGTTGTCCCGGGCGCGTGTCTACGTGCTCAA
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| Amino Acid Sequence |
>outer-membrane lipoprotein carrier protein
MRLIRMLLATALTFSMIPAHADSKDVARLTQLLEKSQTLTARFSQLTLDGGGTQLQETTGEMALQRPGLFNWHTDAPQEQLMVSDGKKVSLWDPDLEQVT IKKLDQRLTQTPALLLSGDVSKISESFDITAKEAGGVIDFTLKPKTKDTLFDSLRLSFRNGIINDMQLIDSVGQRTNILFTGVKANESIAASKFQFQIPK GADVIQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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