Pseudomonas syringae pv. syringae B728a, Psyr_1961
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B728a chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGACCCTGGGCGCTGGAGTGTCGGCGGATTCGGGTTACGAAGTGCCCTACGACAAAGCACTCGGCGTAGCCGGTCGGGCCATCTGGGATGCCAGGGCG TCATGGAAACTGGACGAAAACTGGAAGGTGTCGCTCAACGCCGAAAACCTGTTCGACCGCAAGTACTACACCACCTCGATCGCCACCGACCGCTCCAACG TCTACGGCGAACCGCGCAGCTACGTCCTGACCTTGCGGGGGGATTTCTGATCTAAGCTCAGCGTTATAGAAATCCCTGTGGGAGCGAGCTTGCTCGCGAA GGCAATGGTTCAGATGCCCTGATTTCCGGGGCTGGACAGGCATCTTCGCGAGCAAGCGAAGCGTTGATCGCGTGGCGCGGCACCATCGTGCCCATGCTCC GCGCGGAGCGGTTTCGGTTCGTGATACAGCGCTGTGCACGCGACCAGGCTGCCGCAAATGCATTATCCTTCGCCATTGATCTCAACGAGCCATCCCTGCC
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| DNA Sequence for Gene |
>Psyr_1961
ATGCAATCATCCTCCAGCCGTCTGCGCACCGGCCGCGTGAAAACGCTCGGCCTGCGTCTGGGCGGCGTGGGGCTGGTGCTGGCGTTGAGTGTCCAAGGAC AGGCGCTGGCGGAGGAGTTCGAATTCGATATTCCGGCGCAGACGCTGAGCAGTGCCCTGAAAGAATTGGGCCGCCAGTGCGATCTGCAAATCCTCTACAA CCCCGACGACCTGAACGGCAAGCTCAGCAGCCCGGTGCATGGCAGGCTGACGCCCGAACAGGTCGTCGCCGACCTGCTGAAAAAAGCCAACGTAGCGCAC AGTCTTGAAGACAACACCCTGACCCTTGGCGCTGCTGCCTCCGCACACACCATGAACCTGGGGCCGGTGGCGATAAAGGGCGACTCGTTCGGCATCACCA CCGAGGGCAGCGGCTCGTATGCGGCCACTGGCGTGAGTATCAACAAGACCGCTCAGTCGCTGCGCGAAACGCCGCAGTCGGTTACCGTCATGACCCGCCA GGTGATGGACGACAAAAACCTCACCGGCCTCGACGAGGTGATGGCACAGACGCCCGGCATCACCTTTTCCCAACGCAATTTCGGCTCTCATGTCTTCAGT TCGCGGGGCTTCGCGCTGGAGGACGAGAGTTACATCATCGATGGCGTGGCTGGCCAGGGTTACAGCGTGACCGGCTGGATGACCCCGGACATGGAAATCT ACGACCGCGTCGAAGTGCTGCGCGGCGCGGCCGGCTTGCTGATCGGCGCGGGCAACCCCGGTGGCGCGGTCAATCTGGTCCGCAAGCGCCCGACCGCCCT GCCGCAGTTGTCGATCACCACTCGCGCAGGCAGTTGGGACAGCTACCGGGTCGATCTGGATGGCAGCAGCAAACTCAACGATTCAGGCAGCATCCGCGGG CGTTTTGTAACGTCCTATGAAGACCGCGGCTATTTCACCGATGGTCTGCAGAAAACCGCACCGTTGCTCTACGGCATCCTGGAAACCGACCTGAGCGAAG ACACCACCCTGACCCTGGGCGTACGCCATCAGAACGCCGACACCCAGGGCTTTTCGATCTTCGGTCTGCCTCGCTACAGCAACGGCAAGGCCATCGACCT GCCGCGTTCGACGTCGCTGGCCCAGGACTGGAACCGCCACCAGACCCGCACCGACGAAGTGTTCAGCGAACTGGAAACCCGCTTTGACGACAACTGGAGC GGCACACTGTCTGCCACTCACTCCGATGGCGCTTTCGATCAGAAGGTCGCCTATGCACAGGGCGCTATTGATCCAGCGACGCAGAGCGGTTCCCGGCTGG TCAGAACCCTGTTCCGCTCGGACGATATTCATAGCAATGGCATCGACGCGCACCTGGATGGCCGGTTCGACGCCTTTGGCCTGAGTCACCAGTTGACCGT CGGCGGCAACGGGTCCGAACAGAAACGCGAGTCGCGCTATGCCACGGTCAACGCCAATCAACCGCTGGCTATCTTCAGCCCCGACCACGACGCGATTGCC GAACCTCCGCGTCCGGCCTGGAGCAGCACGGACTACAGCGACAAGCGCTATGGCGTCTACAGCAACCTGCGCCTGAGCCTGACAGAGTCGTTGAGCCTGG TGATGGGTGGCCGGGTCAGCAGCTATGACTATCAGACCACGTCTGCAGGCGTGACCCGTCGCGCCCAGGAGGACAATCAGGTCACCCCGTTTGCGGGGGT CATCTACGACCTCAACCGGGACTGGTCGTGGTACGCCAGTTACACGGATATTTTTCTGCCGCAAAGCGCCTATCGAACCGCATCAGGCACGCTGCTTGAT CCGGCCATCGGCGCCAGCCATGAAACCGGAATCAAGGGCGAGCTGTTCGACAAACGTCTGAATGTGTCACTGGCGCTGTTCTATGTGAAGCAGAAGGATG TGGCCGTCGAGGATGATGCCAATGCTGGTCAGTGCGTTAGCAATGATGCCTATGGGACCTGCTACCTGAACGGTGATATCCGGCGCAGCAAGGGCATCGA CATGGAAATCAGCGGCGAGCCGTTACCGGGATTGCAGACCTTGGCCGGCTACACGTTCAACATCACCCGCGGCAGTGACGGGCAATCGATTTCAGCGGAA ACACCCCGGCACATGCTGCGCCTGACCAGCAGCTACACCCTGCCCGGCGCCTGGCGTCGCTTGACCATCGGCGGCGGGGTCTCGGCGCAGAGCGGCTACT CGGAACACGAGTCGACCCAACCCATCGATAACGCTGGCCGGGCCATCTGGGATGCGCGGGTTGCGTGGAAAATCGACGAACACTGGACGGTGGCGCTCAA CGGTAACAACCTGCTGGATCGCAAATACTACAAGGCCACCGGCGACATCGACCGCGGCAACTACTACGGCGACCCGCGCAACTACGTCCTGACCCTGCGC GGTGATTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGACGCTCGCGCCGCGCACTCAAGAGCGGACGCAGAGCGTCCAGAAAGGCATGTGAACTGACCCCAAAAAGTCGGACGTTTGACTATCGTTCCCATGCT CCGCGTGGGAATGCAGTTCGTGACGCTCTGCGTCACACAGCGGTTCTGTTATGTCAGATAGATTGAGGCTCGGCTCAGGTCACCTTTTCGCCCCTCGGCG ACCTACTTTGATGGGGCCAAAGTAGGCAAAACCCGCAGCTCCGTTTCCGGCCCGACTTCGTCGGGTTCCTTCGCCCTGTCACTGATCCGGGGGTCGCCGC AACGCGCCATCCATGGCGCGGTGCGGCTAGCCTGGCGTCCTGCCAGGCTACCCCCGGATCAGCGCCAGAACTCAGCCGTCACTTACGTCGCAATTTGCGT TGTCAGTGCCATCGTGGTTGAAAAGCACTTATGGAGCAGTGGCTGGCAATGAATGGCCATCGTCCCCACGCTCCGCGTGGGAATGCCGTTCGTGACGCTC
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| Amino Acid Sequence |
>TonB-dependent siderophore receptor
MQSSSSRLRTGRVKTLGLRLGGVGLVLALSVQGQALAEEFEFDIPAQTLSSALKELGRQCDLQILYNPDDLNGKLSSPVHGRLTPEQVVADLLKKANVAH SLEDNTLTLGAAASAHTMNLGPVAIKGDSFGITTEGSGSYAATGVSINKTAQSLRETPQSVTVMTRQVMDDKNLTGLDEVMAQTPGITFSQRNFGSHVFS SRGFALEDESYIIDGVAGQGYSVTGWMTPDMEIYDRVEVLRGAAGLLIGAGNPGGAVNLVRKRPTALPQLSITTRAGSWDSYRVDLDGSSKLNDSGSIRG RFVTSYEDRGYFTDGLQKTAPLLYGILETDLSEDTTLTLGVRHQNADTQGFSIFGLPRYSNGKAIDLPRSTSLAQDWNRHQTRTDEVFSELETRFDDNWS GTLSATHSDGAFDQKVAYAQGAIDPATQSGSRLVRTLFRSDDIHSNGIDAHLDGRFDAFGLSHQLTVGGNGSEQKRESRYATVNANQPLAIFSPDHDAIA EPPRPAWSSTDYSDKRYGVYSNLRLSLTESLSLVMGGRVSSYDYQTTSAGVTRRAQEDNQVTPFAGVIYDLNRDWSWYASYTDIFLPQSAYRTASGTLLD PAIGASHETGIKGELFDKRLNVSLALFYVKQKDVAVEDDANAGQCVSNDAYGTCYLNGDIRRSKGIDMEISGEPLPGLQTLAGYTFNITRGSDGQSISAE TPRHMLRLTSSYTLPGAWRRLTIGGGVSAQSGYSEHESTQPIDNAGRAIWDARVAWKIDEHWTVALNGNNLLDRKYYKATGDIDRGNYYGDPRNYVLTLR GDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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