Pseudomonas syringae pv. syringae B728a, Psyr_1303

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06225 HAMP - - 214 258 3.95459E-4
Pfam PF12729 Four helix bundle sensory module for signal transduction IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain 3 180 4.9E-16
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 376 403 5.8E-19
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 405 434 5.8E-19
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 299 328 5.8E-19
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 82 539 7.6E-75
Pfam PF00672 HAMP domain IPR003660 HAMP domain 208 259 2.0E-8
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 505 4.5E-34
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 8 33 5.8E-19
SMART SM00304 HAMP_11 IPR003660 HAMP domain 211 263 2.2E-8
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 231 540 1.16E-58
Gene3D G3DSA:1.10.287.950 - - - 210 540 3.3E-65
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 271 539 2.8E-42

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.