Pseudomonas sp. WCS358, PC358_RS23555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTATTGCTGTTCGGCAGCCCGGTGCACTGGGAAGTGCCGCAGCTCAAGGGTTTCAACTTCGTTGGCGGCTGGGTGCTGATTCCCGAACTGCTGGCCCTG ACCCTGGCGCTGACCATCTATACCGCGGCGTTCATCGCCGAAATCGTGCGCTCGGGCATCCGTTCGGTCAGCCATGGCCAGACCGAAGCTGCGCGTTCGC TTGGCCTGCGCGAGGGCCCGACCCTGCGCAAGGTGATCATCCCCCAGGCACTGCGGGTGATCATTCCGCCACTGACCAGCCAGTACCTGAACCTGGCGAA GAACTCGTCGCTGGCGGCCGGTATCGGCTACCCGGAGATGGTCTCGCTGTTCGCCGGTACCGTGCTTAATCAGACCGGCCAGGCCATCGAGGTGATTGCC ATCACCATGAGTGTCTATCTCGCCATCAGCATCAGCATTTCGCTGCTGATGAACTGGTACAACAAGCGCATTGCGCTGATCGAGCGGTGAGGATACGCCC
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| DNA Sequence for Gene |
>PC358_RS23555
GTGAATGCTCATGTTTTCAAACCTGACATGCCGCCACCGGTAAAAACCGTCGGCGTGCTCGCATGGATGCGGGCCAACCTGTTCTCCAGCTGGCTCAACA CCCTGCTGACGTTGTTCGCCGTGTACCTGGTGTGGCTGATCGTGCCGCCGCTGGTGCAGTGGGCGTTGATCGACGCCAACTGGGTCGGCACCACCCGCGC CGATTGCACCAAGGAGGGCGCCTGCTGGGTGTTCATCCAGCAGCGCTTCGGCCAGTTCATGTACGGCTACTACCCGGCGGAACTGCGCTGGCGCGTAGAC CTGACCGTGTGGCTGGCGGTACTTGGCGCCGCGCCGCTGTTCATCAAGCGCTTCCCGCGCAAGGCCGTGTATGGCCTGGGCTTCCTGGTGCTGTACCCGG TCCTTGCCTACACGCTGCTGCATGGCGGCTACCTGGGCCTGGAAAGCGTGCCGACCAGCCAGTGGGGCGGGCTGATGCTGACCTTGGTGATCGCCACGGT GGGTATCGTCGGTGCGTTGCCGCTGGGCATTTTGCTGGCATTGGGGCGGCGCTCCAGGATGCCGGCGGTGAAGGTGGTGTGCGTGACCTTCATCGAGTTC TGGCGTGGCGTACCGTTGATCACCGTGCTGTTCATGTCGTCGGTGATGCTGCCGCTGTTCCTGCCTGAGGGCATGAGCTTCGACAAGCTGCTGCGGGCGA TGATCGGCGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGTGGCGGCCTGCAGGCCATCCCCAAGGGGCAATACGAAGCGGCTGCGGCCAT GGGCCTGGGCTACTGGCGTGCGATGGGGCTGGTGATTTTGCCCCAGGCGCTGAAGCTGGTGATCCCCGGCATCGTCAACACCTTCATCGCCCTGTTCAAG GACACCAGCCTGGTGATCATCATCGGCCTGTTCGACCTGCTCAACAGCGTCAAGCAGGCCGCAGCCGACCCGGCCTGGCTGGGCATGGCGACCGAGGGTT ATGTGTTTGCCGCCCTGGTGTTCTGGATTTTCTGTTTCGGTATGTCCCGCTACTCCATGCATCTGGAGCGCAAGCTGGACACTGGCCACAAGCGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGTTTCGAAATGAGTGAAGCGATCAAGCAGCCTGCTGGCCCCGAAGGCATCATCCAGATGCAGGGTGTGAACAAATGGTACGGCCAGTTCCACGTGCTC AAGGACATCAACCTGAATGTGCGCCAAGGCGAGCGCATCGTTCTGTGCGGGCCGTCCGGGTCGGGCAAGTCGACGACCATTCGTTGCCTCAACCGCCTGG AGGAACATCAGCAGGGGCGCATCGTCGTCGATGGCGTCGAGCTGACCAACGACCTCAAGCAGATCGAGGCGATCCGCCGTGAGGTGGGCATGGTGTTCCA GCACTTCAACCTGTTCCCGCACCTGAGCATCCTGGAGAACTGCACGCTGGCGCCGATGTGGGTGCGCAAGATGCCACGGCGCAAGGCCGAGGAAATCGCC ATGCATTATCTGGAGCGGGTGCGTATTCCGGAGCAGGCGCACAAGTACCCGGGGCAGTTGTCTGGCGGGCAGCAGCAGCGCGTGGCGATTGCCCGGGCGC
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| Amino Acid Sequence |
>amino acid ABC transporter permease
MNAHVFKPDMPPPVKTVGVLAWMRANLFSSWLNTLLTLFAVYLVWLIVPPLVQWALIDANWVGTTRADCTKEGACWVFIQQRFGQFMYGYYPAELRWRVD LTVWLAVLGAAPLFIKRFPRKAVYGLGFLVLYPVLAYTLLHGGYLGLESVPTSQWGGLMLTLVIATVGIVGALPLGILLALGRRSRMPAVKVVCVTFIEF WRGVPLITVLFMSSVMLPLFLPEGMSFDKLLRAMIGVILFQSAYIAEVVRGGLQAIPKGQYEAAAAMGLGYWRAMGLVILPQALKLVIPGIVNTFIALFK DTSLVIIIGLFDLLNSVKQAAADPAWLGMATEGYVFAALVFWIFCFGMSRYSMHLERKLDTGHKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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