Pseudomonas syringae pv. syringae B728a, Psyr_0918
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae B728a chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCAACCTGATGAAGAAGATGCGCTTTCCGCGCATCACACTGCCGGTGATTGTCGCGGGTTCATGCCTGCTCAATTACGTACTGTTGTTTGCAGCCATTC TGCTGGTCTTCGCTGCGTTGGGGCAATGGCCGCACTGGCAAATGTTGTGGCTGATCCCGCTGACTATCGTGATTACTGCGCTGGCCGTAGGGCTGGGGTT GATTCTGGGCGTCTTGAACGTATTCATACGCGACGTTGGCCAGGTCATTCCCATTCTGCTGCAGGTATGGTTCTGGTTTACCCCGATTGTCTACCCGCTC AACATCATCCCTGAACAATTCAAGAGTGTCATGGGCATCAATCCCATGTTCCCGATCGTCAGTGCCTATCACGATGTTCTGGTTTATGCGCGAGCGCCTG ATCTGCAAAGTATGGCCGTCATCGCCGTTGTCGCTGCTGGGTTAATGCTGTTGGGTCTCTTCATGTTTCGCCGGGCGGCGCCGGAAATGGTGGATGTACT
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| DNA Sequence for Gene |
>Psyr_0918
ATGAGCCTGCTAAGTGTCAGTAATCTGGGAAAGGCCTATCGCGTCTATGCCTCTGAGTTTCAGCGCATCGCTCGCTGGTTTGGCATACCCACCAAGCCAA GTGAAGAGCACTGGGTGCTTAAGCACATCAGCTTCTCGATCGAGCCTGGTGAGGCAATAGGGATTGTCGGGCAAAACGGGGCGGGTAAGTCGACGCTGCT CAAGATGATAACCGGGACTTTGCAGCCTACTGAGGGGCATGTTCAGGTCAATGGTCGTATTGCCGCTATTCTCGAGCTGGGGATGGGGTTTACTCCCGAT CTGACCGGGCGTCAGAACGTCTATCATGCCGCCGGCTTGATGGGGTTCAGTGCCGAACAGATCAACGGTGTCATTGATGAGGTCGAGGCATTCGCGGAAA TTGGCGATTACTTCGACGAGCCAGTGAGGATGTATTCGAGTGGTATGCAGATGCGGGTTGCGTTCGCGGTTGCCACAGCGATCAGGCCTGAAATACTTAT CGTTGACGAGGCGTTATCTGTTGGCGATAGCTACTTCCAGCATAAAAGCTTCGAGCGTATACGTCAGTTCCAGGCTCAGGGAACGACATTGCTTATCGTG TCTCACGACCGAGGTTCCATTCAGGCGCTTTGTAGCCGAGCAATATTGCTTGAAAAAGGTACGGTGATAAAAGACGGCAAGCCTGAAGAGGTCATGGATT TTTATAATGCATTGATTGCTGAAAAGGAAAACGCAACGGTTCAGGTCCGAGAGCTTGAGGATGGTTCGATGCAGACTCGCTCAGGCAGCGGAGAGGCCAC TATCGGCTCCGTCAGCCTGCACAATGCTGCCGGCGAGCGTATTGAGTATGTGTCTGTCGGCGAGCCAGTGTCTTTGCGCATCAATGCTCAGGTCAATAGT GCAATTCCTGAGCTGGTCGTAGGCTATCTCATCAAAGATCGCCTGGGGCAGCCTGTCTACGGCACCAACACCCATCACATGGACTGCAAGGTCATTGATC TGCAGGGAGGAGAGTCGCTGGATTACTCCTTCAATTTTCCAGCTAACCTGGGGGTGGGCTCGTATTCGGTTGCGGTGGCACTCCACACAACGGACAGTCA CTTGTCACGCAATTATGAATGGGTAGATCTGACGGTCGTGTTCAATGTAGTCAATATCTCGCAAAGCGAGTTTGTTGGGTTGGCATGGCTGCCGCCTGTT GTGGAGTGCAGTAGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGTTCCTTTCTATCGTGCTTTTGAAGACCGTTATCGTGGATCGCGTGAGTTGATCCATGAGCGTCAGCAGGTTTACATTCCTTTCCTGGAACCTTTAAA GCAGATTTATCCGGAATCTCAGGCACTGGACTTGGGGTGTGGCCGTGGTGAGTGGCTGGAAATTCTTATTCAAAACGGCTTTCAGGCGCTTGGTATCGAT CTTGATGTGGGTATGCTTGAGGCCTGTACGGCGTTGGGATTGCCGGTCGAAAACATGGATGCACTGGAAAAGCTGAGAAGCTTGCCAGATGAAAGCATGA CAGTTATTTCTGGTTTTCATATCGCCGAGCATATCCCGTTTGGCGATCTTAAAGTGTTGGTTGCCGAGGCGCTGAGAGTACTAAAACCTGCCGGTCTGCT TATTCTGGAAACGCCCAACTCGGAAAATCTTGTGGTGGGCACGCAGACATTTTATCTGGACCCTACCCATACTTGCCCCATACCGCATTTGCTGTTGAGC
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| Amino Acid Sequence |
>ABC transporter
MSLLSVSNLGKAYRVYASEFQRIARWFGIPTKPSEEHWVLKHISFSIEPGEAIGIVGQNGAGKSTLLKMITGTLQPTEGHVQVNGRIAAILELGMGFTPD LTGRQNVYHAAGLMGFSAEQINGVIDEVEAFAEIGDYFDEPVRMYSSGMQMRVAFAVATAIRPEILIVDEALSVGDSYFQHKSFERIRQFQAQGTTLLIV SHDRGSIQALCSRAILLEKGTVIKDGKPEEVMDFYNALIAEKENATVQVRELEDGSMQTRSGSGEATIGSVSLHNAAGERIEYVSVGEPVSLRINAQVNS AIPELVVGYLIKDRLGQPVYGTNTHHMDCKVIDLQGGESLDYSFNFPANLGVGSYSVAVALHTTDSHLSRNYEWVDLTVVFNVVNISQSEFVGLAWLPPV VECSR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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