Pseudomonas sp. WCS358, PC358_RS21540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGGCCGATGCTGCTCAAGGTGGTCACCCCGATCAGCGCCGAAGACACCGGCGGCACCCTGCACGATCGCCTCGCCGAAATGGGCCCACCGGCCGTCC TACAGGCCATCGCTGGCCTCGCCGCCGGCACGCTGCAAGGTGAAGTCCAGGACGACACCCTGGCCACCTATGCACACAAGCTGAACAAAGACGAAGCGCG CATCGACTGGAGCCGCCCGGCCGTGGAGCTGGAGCGCCTGATCCGTGCCTTCAACCCGTGGCCGGTGTGCCATAGCACCCTGGACGGCGAAAGCGTGAAG GTGCTGGCGGCCAGGTTGTCCACAGGCAAGGGCGCCCCCGGCGAGATCCTGTCTGCCAGCAAAGATGGCCTGGAGGTCGCTTGTGGTGATCAAGCCTTGA GCCTGACCCGCCTGCAACTGCCCGGCGGCAAGGCGCTGAACTTCAGCGACCTGTTCAACAGCCGCCGCGAGAAGTTCGCCAACGGCAAGGTGCTCGGCCA
|
|
| DNA Sequence for Gene |
>PC358_RS21540
ATGAACCCACGCCTGGCTGCCGCCCGTGCCCTTGCCGCTGTACTCAGCGGCAAGGCCTCGCTGAACAGTTCGTTGCCGGCGCAACTGGACAAGGTCGATG AACGCGACCGTGGCCTGACCCAGGACCTGGCGTTCGGCACCGCCCGCTGGCAGCCGCGCCTCGACCTGTTGGCCGCGCAGTTGCTGCAAAAGCCGTTCAA GGCCGCCGATGCCGATGTGCAGGCACTGCTGCTGGTCGGCTTGTACCAGCTGTTCTACACGCGCATTCCGGCACACGCCGCCATCGGCGAGACCGTTGGC TGCGCCGACAAGCTGAAAAAACCGTGGGCCAAGGCCCTGCTCAATGCCGTGCTGCGCCGCGCCCAGCGTGAAGGCGAAGCGCTGCTCGCCAGCATGGAGC GCGACCCGGTGGTACGCACTGCGCACCCTCGGTGGCTGCAGAAAGCGCTGAAAGCCTTCTGGCCAGAGCAATGGGAAGCCATCTGCGCCGCCAACAACGC CCACCCGCCGATGATCCTGCGGGTCAACCGCCGCCACCACAGCCGCGATGCCTACCTGGCCTTGCTGGCAGAGGCCGGCGTCGGCGCCAGCGCCTGCCAG TTCAGCCGCGACGGTATCGTGCTGAATGAGCCCTGTGATGTGCGCAGCCTGCCGGGCTTCGCCGAAGGCTGGGTGAGCGTGCAGGACGAGGCCGCGCAAT TGTCTGCCGACCTGCTCGAACTGGCCCCCGGCCAACGCGTGCTCGACGCCTGCTGCGCCCCGGGCGGCAAGACCTGCCACTTGCTCGAAGCCGAGGCCGG CCTTGCACACCTGGTGGCCATCGACCTGGAGGCCAAACGCCTGACCCGCGTGCGCGAGAACCTCGAGCGCCTGCAACTGGACGCCGAACTGATCGCCTGT GATGCCCGCGACACCGCCAGCTGGTGGGACGGCAAACCTTTCCAGCGCATCCTGCTCGACGCCCCGTGCTCGGCCACCGGCGTGATCCGCCGCCACCCGG ACATCAAGCTGACCCGCCAGGCCGACGACATTCCGGCCCTGGCCACGCTGCAAGGCGAGCTGCTCGATGCCCTGTGGCCAACCCTGGAAGTAGGCGGCAT GCTGCTCTACGCCACCTGCTCGAGCCTGCCGACCGAAAACACCGAGGTGATCGAGGCGTTCCTCGCCCGCACCCCGGGCGCCCGTGAGCTGGACCTGGCC ACCGAGGCCGGCTTGCGCCAGCCCCACGGCCGCCAGTTGCTGGCCCAGGAAGGCGGCCACGACGGTTTCTATTATGCCAAGCTGATCAAGATCGCCGCTT CACGCGGATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCACAACGGTTCAGGGAGTAGCGGATGAAGATCATCATCCTCGGCGCAGGGCAGGTGGGCGGTACGCTGGCAGAGCACCTGGCCAGCGAGGCCAACGACA TCACCGTGGTCGACACCGACGGCGAGCGCCTGCGCGACCTCGGCGACCGCCTGGACATCCGCACGGTGCAGGGCCGCGGCTCGCTGCCGACGGTGCTGCG CCAGGCCGGCGCCGACGACGCCGACATGCTGGTGGCGGTGACCAACAGCGACGAGACCAACATGGTGGCCTGCCAGGTCGCCTATTCGCTGTTCCATACC CCGACCAAGATCGCCCGGGTACGCGAATCAGCCTACCTCACCCGCGAAGAGCTGTTCCACAACGACCACATCCCGGTGGACGTGCTGATCAGCCCCGAGC AGGTGGTGACCAACTACATCAAGCGCCTGATCGAGCACCCGGGCTCCTTGCAGGTGATCGACTTCGCCGAAGGCAAGGCGCAACTGGTGGCGGTCAAGGC
|
|
| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADADVQALLLVGLYQLFYTRIPAHAAIGETVG CADKLKKPWAKALLNAVLRRAQREGEALLASMERDPVVRTAHPRWLQKALKAFWPEQWEAICAANNAHPPMILRVNRRHHSRDAYLALLAEAGVGASACQ FSRDGIVLNEPCDVRSLPGFAEGWVSVQDEAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLAHLVAIDLEAKRLTRVRENLERLQLDAELIAC DARDTASWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALATLQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIEAFLARTPGARELDLA TEAGLRQPHGRQLLAQEGGHDGFYYAKLIKIAASRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|