Pseudomonas sp. WCS358, PC358_RS21450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGACCGACCCTGAAGGCATGGTCAGTATCGTCCTGGGGCAGCACCATATCCGCGCGACCACCGGCGAATTCACCTTCACCTCCAAGCTGGTGGACGG CAAGTTCCCTGACTACGAGCGCGTATTGCCCAAGGGCGGCGACAAACTGGTGGTGGGTGATCGTCAGGCACTGCGTGAGGCCTTCAGCCGTACTGCCATC CTGTCCAACGAGAAGTACCGCGGTATTCGCCTGCAACTGGCCGCTGGCCAATTGAAGATTCAGGCCAATAACCCGGAACAGGAAGAAGCTGAAGAAGAAA TCAGCGTCGACTATAACGGCAGCGCGCTGGAAATCGGCTTCAACGTCAGCTACCTGCTGGACGTGCTGGGCGTCATGACAACCGAGCAGGTGCGTCTGAT TCTGTCCGACTCCAACAGCAGTGCGCTGCTGCAGGAGGCTGGCAATGATGATTCGTCCTACGTTGTCATGCCAATGCGTCTGTAACCTGTAGCAGAGCGA
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| DNA Sequence for Gene |
>PC358_RS21450
ATGTCCCTTCGACGTATCATGGTCACCGCGGTGCGCAACCTGCACCCGGTGACCCTCTCACCTTCTCCCCGCATCAACATCCTCTACGGTGCTAATGGCA GCGGCAAGACCAGTGTGCTTGAAGCTGTGCACCTGCTTGGGCTGGCGCGGTCCTTCCGCAGTACGCGTCTTAACCCCGTCATCCAATACGAGCAGCCAGC GTGCACCGTGTTTGGCGAGGTCGAGTTGACGTCGGGAGGCACCAGCAACCTGGGGGTATCTCGTGAACGGCAAGGCGAGTTCACAATTCGCATCGACGGG CAGAATGCCAAAAGTGCTGCGCAGCTGGCCGAACTGTTGCCATTGCAGCTGATCAACCCAGACAGTTTCAGGTTGCTGGAGGGCGCCCCGAAAATTCGCC GCCAGTTCCTGGATTGGGGAGTGTTCCACGTGGAACCTCGGTTTTTGCCTGCCTGGCAGCGTCTGCAGAAGGCGCTCAGGCAGCGAAACTCGTGGTTGCG GCATGGTACACTTGACCCAGCTTCGCAAGCCGCCTGGGACCGGGAATTGTGCCTGGCCAGCGCGGAAATAGATGAATACCGTCGCAACTACATCATGGCC TTGAAGCCCGTCTTCGAGCGAACCCTGAGCGAACTGGTCGAGCTTGACGGGTTGACCCTGAGCTATTACCGAGGCTGGGACAAGGACCGGGAACTCAACG AAGTACTCGCCTCCTCTCTCCTTCGTGATCAGCAGATGGGCCATACCCAGGCTGGTCCGCAGCGTGCTGATCTACGACTTCGATTGGCTGCCAACAACGC AGCCGACATTCTGTCGCGAGGGCAGCAGAAACTTGTGGTGTGTGCGCTACGCATTGCCCAAGGGCACCTCGTCAGTCAGGCTCGCCGTGGTCACTGTATT TATCTCGTGGATGATTTGCCGTCAGAACTGGACGAGCAACATCGCCGCGCATTGTGCCGCTTGCTTGAAGAATTACGCTGCCAGGTGTTCATCACCTGTG TAGATCACGAATTACTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCTGTATCACCCAGACCCACGACCATCGGGA GTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCATGAGCGAAAATCAAACGTACGACTCCTCCAGCATCAAGGTGCTGAAAGGTTTGGATGCCGTACGCAAGCGTCCCGGCATGTACATTGGCGACACC GATGATGGTAGCGGCCTGCACCACATGGTCTTCGAAGTGGTCGACAACTCGATCGACGAAGCCCTCGCCGGTCATTGCGATGACATCACCGTCATCATCC ACACGGATGAATCCATCAGCGTGCGCGACAACGGTCGCGGCATTCCGGTTGATGTGCACAAAGAAGAAGGCGTTTCCGCAGCGGAGGTCATCATGACCGT GCTGCACGCCGGCGGTAAGTTCGACGACAACTCGTACAAAGTTTCCGGCGGCCTGCACGGCGTGGGTGTTTCTGTAGTGAACGCTCTGTCCGAAAAGCTG GTACTGACAGTACGTCGCAGCGGCAAGATCTGGGAGCAGACCTACGTTCACGGTGTCCCCCAGGCGCCGATGGCGATTGTCGGTGACAGCGAAACGACCG
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| Amino Acid Sequence |
>recombinase RecF
MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPVIQYEQPACTVFGEVELTSGGTSNLGVSRERQGEFTIRIDG QNAKSAAQLAELLPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQAAWDRELCLASAEIDEYRRNYIMA LKPVFERTLSELVELDGLTLSYYRGWDKDRELNEVLASSLLRDQQMGHTQAGPQRADLRLRLAANNAADILSRGQQKLVVCALRIAQGHLVSQARRGHCI YLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELLREGWQTETPVALFHVEQGCITQTHDHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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