Pseudomonas sp. WCS358, PC358_RS21135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCTGATCGCCTACAAGATCTTCGATTCGATCCGCCTGCTCCAGCGCGCCATGGACATGCTGCGCGAGCACTGCATCGTCGGTATCACTGCCAACGAAC AGCGCTGCCGTGAACTGGTCGAGCACTCGATCGGCCTGGTCACCGCCCTGAACCCTTACATCGGCTACGAAAACGCCACCCGTATCGCCCGCGTTGCCCT GGAAACAGGCCGCGGTGTGCTGGAACTGGTGCGCGAAGAGAAGCTGCTGGACGAAGAGATGCTCAACGACATCCTGCGTCCGGAAAACATGATCGCACCG CGTCTGGTTCCGCTGAAGGCGTAACCGACCGCTTCACCTGTCTCACCAGGTCGAGGGACTAGACACCTCTCAACCTTTCAAAGGCCCGAGCGCATGCTTC GGGCCTTTTTTTTGCCTGCGCGTTTCGAGCCGCCGTGCAACCTGCGCATCCCGGCACACAACTTGCTCCATAATGCATCCCACCCAACGGGATACCGAGC
|
|
| DNA Sequence for Gene |
>PC358_RS21135
ATGCTGCACAGCCACCTGACCACCCTCAACGCGGTTTCGCTGATCCTCAACGTCTTCCAGGCAGAGGGTTGCGAGGCGGCGGCCTTGCTGGCCGGCAGCG GCATCGGCCCGGCGGACCTGGGGCATGCCGACGCACGCATCACCACCCAGCAAGAGCTGCAAGTGTGTGCCAATGCCGTTGCCCGGCGTGAAGACATCGG CCTGGAGCTGGGCCAGCGCATGCATGTGTCGTGCTATGGCATGCTCGGTTACGCCCTGCTCTCCAGTGCCACTTTGGGTGACGCCCTGCGCCTGGCACTG CGCTTTCCGGCACTGCTGGGAACAGTCTTCGAGCTACGCCTGATCGACGATGGCCAGCGCGTCTGGCTCAGCGCCAGCGACTACCGTGACAGCCCCGCGC TGACCGCCTTCAACGCCGAGTTCTGCCTGGTCTCGCTGAAAGTGATCTGCGACGACCTGCTTGGCCGTCCACTGCCGCTGCTCGGCACCCGTTTCGAACA TGCCCGGCCGGGCTACCACAGCCTATATACCCGTGCCTTCCAGTGCCCGATCGGCTTCGCTGCCGAGGACAACGCCTTTGCCTTCGAACGGCGTTGGCTG GACATGCCGCTACCGTTGGCCGACCCCATCACCCACAAAGCCATGGGCGAGCGCTGCCGGCGCCTGAACCTGGAGTTCACAGGGCGCCAGGCCTGGCTCG GGCGAATTCGCCAACTACTGGCCCAACAACTGGATGCAGCACCCGGGCTTGAGGGCCTGGCGCGGCAGATGAACTGCTCATCGCGGACCTTGCGCCGGCA CCTGCAGGCACTGGGCAGCAGTTATCAACAGTTGCTCGATGAACTGCGCTTCGAGCGGGCCAAGCAGTTGCTGGCCGATGAGCACATGCCGATCTACCGC ATTGCCGAAACCTTGGGGTTCAGCGAAACGGCCAGCTTCCGCCATGCCTTCCAACGCTGGAGCGGAGTGGCGCCTAGCCATTTTCGCGGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCGCAAAAGTGGCCAGCGAGCTTGGCCACATCGATCCCCTTTTGGCCGTTTGCGTCGTTCTCCCTGGCAGGGCCTGCACTGAAAATGGGCCCACGCCA GTTCAACCGGAGAACAACAATGCTGACGATCTATTCCGATGACCACCGCCTGCACCACGGCCGCTGCGAGCTGATCGACGGCAAGCTGATGCCCTGCTTC GAAATGCCCTCGCGCGCCGACCATGTGCTCGATCAAGTGAACAAACGCCAACTCGGCGATGTACAGGGCCCAACCGACTTCGGCCGTGCACCGCTGCTGC GAATCCACAGCGCCGATTACCTGGACTTCTTCGAGGGCGCCTGGGCGCGCTGGGCCGCACTGGGCCACGACGGCGACCTGCTGCCCTTCACCTGGCCAGC CCGCACCCTGCGCCAGCTAAAACCCACCGGCCTGCATGGTGAACTCGGCTACTACAGCTTCGACGCAGGCGCACCGATCACAGCCGGTACCTGGCAGGCT
|
|
| Amino Acid Sequence |
>AraC family transcriptional regulator
MLHSHLTTLNAVSLILNVFQAEGCEAAALLAGSGIGPADLGHADARITTQQELQVCANAVARREDIGLELGQRMHVSCYGMLGYALLSSATLGDALRLAL RFPALLGTVFELRLIDDGQRVWLSASDYRDSPALTAFNAEFCLVSLKVICDDLLGRPLPLLGTRFEHARPGYHSLYTRAFQCPIGFAAEDNAFAFERRWL DMPLPLADPITHKAMGERCRRLNLEFTGRQAWLGRIRQLLAQQLDAAPGLEGLARQMNCSSRTLRRHLQALGSSYQQLLDELRFERAKQLLADEHMPIYR IAETLGFSETASFRHAFQRWSGVAPSHFRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|