Pseudomonas sp. WCS358, PC358_RS20955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACAAGATCAGGGTGTCTGTTGCGGCCCTTTGGCGGGCAAAGCCGTTACCACAGGGAGCGCTATGATCCGCACCCGGCAAAACATCGCTTCCCTATTGGC TGGTGATTTTTTAAACTATTGAGTCCGCCTGCCCAAATTGGGCTGCACGCCTACCGCATTTGCTACTGAGGAAGACCATGGCCCGCGTAACTGTTGAAGA CTGCCTGGAACACGTGGATAACCGTTTTGAGCTGGTCATGCTCTCGACCAAGCGCGCCCGTCAGCTGGCGACCGGCGGCAAAGAGCCACGCGTAGCGTGG GAAAACGACAAGCCGACCGTTGTTGCCCTGCGTGAAATCGCCGAAGGCATCGTCACCAACGAGTTCATCGCCGCTGAAGAGATCGTCACCGAGGATCCGG TCTTCGCCGCGTTCGAGGACGAGTCCAACGAGGCTGTCTGATTGATGCCAGGTCGACGTCGCGCGGCACAAGGCCCTCTTCCTCTGCAAGAGGTGAACCC
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| DNA Sequence for Gene |
>PC358_RS20955
ATGCCGGGTATAGAAGCCTTAGCCGAACGGCTGTCGACCTACCTGGGCCCCGAACAGGTCAACCTGGTTCGTCGCGCCTATTTCTACGCCGAACAGGCCC ACGATGGGCAGCGCCGCCGCAGCGGCGAGCCCTACGTGACCCACCCGCTGGCCGTGGCCAGCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGAT GGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCAAGGAAGCCCTCAGCCAGCAGTTTGGCGAGACGGTCGCCGAGCTGGTCGATGGGGTC AGCAAGCTGACCCAGATGAACTTCGAGACCAAAGCCGAGGCGCAGGCCGAGAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGATATCCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTGCTGTCTGGCGAAAAACGCCGACGCATCGCCAAGGAAACCCTCGAAATCTACGC GCCCATCGCCAACCGGCTGGGCATGCACACCGTGCGCGTCGAATTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGCTCGTCGCTGATCCACCGG GCGGTCAAGAGCGCCCGCGGCAACCGCAAAGAGATCGTCGCCAAGATCGAACAGTCGCTGGCCAACTGCCTGGCCGCTGACGGTATCGAGGGCGAGGTCA GCGGCCGGCAAAAACACCTTTATGGCATCTACAAGAAGATGCGCGGCAAGCGCCGCGCCTTCAACGAGATCATGGACGTGTACGCCTTCCGCATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTCGGCGCCGTGCACAACCTGTACAAACCGCTGCCCGGTCGCTTCAAGGACTACATCGCGATCCCCAAGGCG AACGGCTATCAGTCGTTGCACACCACGCTGTTCGGCATGCATGGCGTGCCCATCGAAATCCAGATCCGCACCCGCGAGATGGAAGAGATGGCCAACAACG GCATCGCCGCGCACTGGCTGTACAAGTCCAACGACGACGAACAGCCCAAAGGCAGCCACGCCCGTGCCCGTCAGTGGGTCAAGGGTATCCTCGAGCTGCA GCAGCGTGCGGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCAAAAGGCCGCATCATGGAG CTGCCCAAAGGCTCCACGGCCGTCGACTTTGCCTACGCGGTACACACCGACGTTGGCAACAGTTGCATCGCCTGCCGCATCAACCGCCGCCTGGCGCCAC TGTCGGAGCCCCTGCAGAGCGGCTCGACGGTAGAAATCGTCAGCGCGCCGGGCGCCCGGCCGAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGCACGCACATCCGCCACGCGCTCAAGCAACAGCGCCGCTCCGAGTCCATCAGCCTCGGCGAGCGCTTGCTGAACAAGGTACTGACCGGTTTCGACAGC AGCCTCGAAAAAATCCCCCAGGAGCGCATTCAGGCGATTCTCGCCGAATACCGCCTGGAGCTGATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAACC GCATGGCCTATGTAGTCGCCCGCCGCCTGCTGTCGGCCGAAGGCGAGCAACTGCCGGCGCCGGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGCCTGGT ACTCAGCTACGCCAAGTGCTGCACGCCGATCCCTGGTGACCCGATTGTCGGCCACCTGTCGGCGGGCAAAGGCATGGTCGTGCACCTGGAGAACTGCCGC AACATCAGTGAAATTCGCCACAACCCGGAGAAGTGCGTGCAGCTTTCCTGGGCCAAGGACATCGCGGGCGAATTCAACGTCGAGCTGCGCGTCGAGCTGG AGCACCAACGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAATGCCGCCGACGGCAATATCGAGAAGATCAGCATGGACGAACGCGACGGCCGTATCAG CGTGGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCGCGTGTGATCAAGAAGCTGCGTACCTTGACCGGTGTGGTCCGCATCACCCGCATG CGTACGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCAACCGCAAGGAGTCATCATGAGCAAGTCCGTCATTACCAGCGACAAAGCCCCCGCCGCTATCGGTACCTACTCGCAAGCGATCAAGGCCGGCAA CACCGTCTACATGTCGGGCCAGATCCCGCTGGACCCAAAAACCATGGAACTGGTCGAAGGCTTCGAAGCCCAGACCGTTCAGGTCTTCGAGAACCTCAAG GCCGTGGCTGAAGCCGCTGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGGTGATGG GCCGCTACTTCGAACAGCCTTACCCAGCCCGCGCCGCGATTGGCGTTGCCGCGCTGCCGAAAGGCTCGCAGGTCGAGATGGACGCGATCCTGGTCATCGA GTGATGCCCCCGGTGACGGGCGCTCTGCCCGTCACGCTCTCTCCCCCAAGGTTACCCACCATGCGTCAAGCACTGCCCCTCGCGCTGGCAGCCCTGCTTT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPGIEALAERLSTYLGPEQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVASILADMHMDHQSLMAAMLHDVIEDTGIAKEALSQQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHTVRVEFEDLGFKAMHPMRSSLIHR AVKSARGNRKEIVAKIEQSLANCLAADGIEGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSNDDEQPKGSHARARQWVKGILELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKQQRRSESISLGERLLNKVLTGFDS SLEKIPQERIQAILAEYRLELIEDLLEDIGLGNRMAYVVARRLLSAEGEQLPAPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCR NISEIRHNPEKCVQLSWAKDIAGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRTLTGVVRITRM RT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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