Pseudomonas sp. WCS358, PC358_RS20330
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCTTCATGCTTGATCTGCGGGTCCAGGGAAAACTTCGACTGGCTTGGCTCCGGCAGCCCAAGGCCAATGGCATAACCGAAATCTTCGTCGGTGAAGC CCATTTTCAGGCGCCGTACCTGCTGGCGCGGCCCACCTTGCACCGGCACCTCGCCCTTGAGCATGCGCCGGCTGAGTTTTTCTGGCCCGGCATGGAACGT GGATTCCAGCCCACCCTCGGCGGCCAAGGCATTGACCACCCCGCCGCGCGCTGTCTCGGCCAGCAGGCGCAGGGCCTTGTACAGGTTGGACTTGCCGCTG CCATTGGCGCCAGTAATCAGGTTCAGCCGACCCAGCGGCATCACCAGTTGGTTGATCGAGCGGTAGTTGGCGATGGCCAAGGTTGTGAGCATGGGGCGCT TCCGTGTGCGGGCGAACAGGCAGTATCGCTGTTTGCTGAACCCTGAACTACGCTAACAGTCGCATTCCTCGAACCATTTGCGCGCAAGCAAGGAGCCCGC
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| DNA Sequence for Gene |
>PC358_RS20330
ATGACGTTGAGGCGTCTTCTGTCGGTCGTCTGCCTGGGGTTGCTGTTCATGTTGTCGGGGTGCGAGAGGGAAGTCTCGAGCCCGGAACTGCCTCGGGTCG GCGTGCTACAAGTACAACCCACTGACTTCGCTGCCAGGGTCACCCTGACCGGCGACGTGCAGGCACGGGTGCAAACCGATTTGTCGTTCCGTGTGGGCGG CAAGATCATTTCACGCAGCGTCGATGTGGGCGATCACGTCAAGGCCAACCAGGTACTGGCGCGGCTTGACCCCAAAGACTTGCAGAACAACGTCGACTCG GCCAAGGCTGAAGTGTTCGCCGCCCAGGCGCGTGTGACACAGACGGCCGCCGCCTTCGTGCGCCAGCAAAAACTGTTGCCCAAAGGCTATACCAGCCAGA GCGAGTACGACTCTGCCGAAGCGGCGCTGCGCAGCAATCAGAGCGCGCTCAAGGCCGCTCAGGCACAGCTGGCCAATGCCCGGGAGCAGTTGAGCTATAC CGCGCTGGTGTCCGAGGCCGATGGCGTGATCACCGAGCGCCAGGCCGAAGTCGGCCAGGTGGTGCAGGCGACCATGCCGATCTTCGGCCTGGCCCGCGAT GGCGACCGCGACGCGGTGTTCAATGTCTATGAATCGCTGCTGGTGGCACCGCCAAGCGATGCCGGAGTGGTCGTCAGCCTGCTCGATGACCCCAAGGTTC AGGCCCAGGGTTTTGTCCGCGAAATCACCCCGACGGTGTCGGCGCAGAGTGGCACGGTGCAGGTCAAGGTGGCCTTGCGCAACGTGCCGCCGGGCATGCA ATTGGGCTCGCCGGTCACCGCCACGGCCAATGCTCAGGGGCGACCGAGCATCGAGTTACCTTGGGCGGCACTGACCAAGGCCTTGCATGAGCCGGCAGTG TGGGTGGTGGGCGAGGGCGACAAGGTCGAGCTGCGCAAAGTGCAGGTCACGCGCTACCTCACCGGCAAGGTCGTCGTCGCCCAAGGCATCAAAGGTGGCG AAACGGTTGTGGTCAGCGGTGGTCAGCTCTTGCATCCGGGCATGCAGGTTGAAAAAGTCGATGCTCAGGATGGAGGCGCCGCGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGTCTAATGCTGATAGGCGCGGCAGGGCTGTTGTTGAGCGCCTGTGGCAGTGAAGAACAGCAACCCGAAGCCGTGCGCCCTGTGCTGTCGACCCTGGT CGAGGCGCAGGCGCAGTCGCAGCTGGGCCGCTTCGCCGGCGCCATCCAGGCGCGTTTTGAAAGTACCCTGGGTTTTCGCGTCTCCGGGCGCATCGCCCGG CGTTGGCTGGATGTCGGCGCCCAGGTGAAACCCGGCGATACCTTGGCCACCCTTGACCCGACCGACCAGCAGAACCAGCTGCGCGCGGCCGAGGGCGACC TCGCCAGGGTTCAGGCGCAGTGGATCAACGCCCAGGCCAACGCACGTCGTCAGCAGCAGTTGTATGACCGCGGCGTTGGCGCCCAGGCCCAGCTGGATAT TGCCCAGACCGACCTGAAAACCACCGGTGCCAGCCTGGAACAGGCCCGCTCGGCGGTCAGCCAGGCTCGCGATCAGCTCGACTACAGCACCCTGCGCAGC
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| Amino Acid Sequence |
>RND transporter
MTLRRLLSVVCLGLLFMLSGCEREVSSPELPRVGVLQVQPTDFAARVTLTGDVQARVQTDLSFRVGGKIISRSVDVGDHVKANQVLARLDPKDLQNNVDS AKAEVFAAQARVTQTAAAFVRQQKLLPKGYTSQSEYDSAEAALRSNQSALKAAQAQLANAREQLSYTALVSEADGVITERQAEVGQVVQATMPIFGLARD GDRDAVFNVYESLLVAPPSDAGVVVSLLDDPKVQAQGFVREITPTVSAQSGTVQVKVALRNVPPGMQLGSPVTATANAQGRPSIELPWAALTKALHEPAV WVVGEGDKVELRKVQVTRYLTGKVVVAQGIKGGETVVVSGGQLLHPGMQVEKVDAQDGGAAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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