Pseudomonas sp. WCS358, PC358_RS19370

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01627
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 439 536 6.5E-5
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1528 1639 1.15924E-32
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1360 1493 1.28E-21
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 715 836 3.59E-13
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 16 108 1.8E-7
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1528 1639 2.6E-28
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1176 1360 3.3E-62
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 887 985 1.07498E-11
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1175 1360 1.2E-53
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 577 673 5.7E-12
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1177 1358 1.05E-36
SMART SM00260 chew_2 IPR002545 CheW-like domain 1353 1497 4.4E-25
Coils Coil Coil - - 1069 1096 -
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 24 135 3.66E-18
Coils Coil Coil - - 1141 1161 -
CDD cd16916 HATPase_CheA-like - - 1183 1358 4.05422E-79
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1366 1497 4.1E-21
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1038 1175 3.6E-8
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 22 140 1.2E-9
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 886 1017 1.2E-29
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1321 1339 9.5E-12
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 575 694 1.7E-20
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1435 1495 7.5E-18
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 439 569 3.9E-29
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1526 1639 1.0E-36
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 295 412 3.94E-9
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 439 517 1.12407E-9
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 887 984 3.6E-10
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1265 1279 9.5E-12
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 717 843 1.4E-10
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 441 529 5.5E-14
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1345 1358 9.5E-12
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 438 562 9.55E-27
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 570 705 7.1E-17
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 575 661 3.48043E-8
Gene3D G3DSA:3.40.50.2300 - - - 1528 1647 9.3E-42
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 575 669 0.025
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 440 569 0.0
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1220 1361 3.0E-24
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1224 1360 1.3E-14
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 887 1005 7.07E-28
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1528 1644 8.97E-37
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 889 981 1.6E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.