Pseudomonas sp. WCS358, PC358_RS16780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAAGTGCCCTGAAGGGACTAACTTTAGCCCTGTCCTCATTAGCACTTGCATCGCAAGAAGGTAGTTTCAAATGTCCAACAGTATGGGTATTGCCAGCGT CTTCGTCCTGTCTTCCCTGTTGTTGTCGCCCCTGGCCATGGCCGAAGAATCCCCGGCTTTCGTCGCCCGTAATGCAGAGCTCGCCGCCGTCCATCAAGAG GCCCGCGACGCTGTAGCCGCACAACAGGCCGATGCCGTAAAAGACGCAAACCAGACCGCTTCCAAGGTGTCCAGCGACGCCAATGCCGACAGCTGATCGG CCGCCGTACCTGCTCCCGTTTTCCCTTGGCTACGCCATGGGCACCTTAGGTGCCGATATGTTAGCCTTTTAAAGCCGCTGCCAATCAGCGGCTTTTTTTA TGTGTTTTAACTATCAGCCCGGCGGTAACGTCACCCATAAGAAAGTTGCACATTCAAAAATAAAAACTGCCCCACCGTCAGACCAAAGGAGCTAGTACCG
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| DNA Sequence for Gene |
>PC358_RS16780
GTGCCTTCCGCGTTTCGTTTTACCCCGTTGTTCATTGCATTGACTGCAACGATACCTTTCGCCGCCCAGGCAGATGAAGACAAGGCTGATGGCTTCATCG AAGGGTCTTCCCTGAACCTGCATTTTCGTAATGCCTACTTCAACCGCGACAACCACAATGCCGGCGCGCGCGACACCCGCGAGTGGGGCCAGGGCGCAGT GGCGCGCTTCGAGTCGGGCTATACCCCCGGCGTGATCGGCTTCGGCGTGGACGCCCATGCCATGCTGGGCCTCAAGCTCGATGGCGGTGGCGGCCATGCT GGCACCAGCATTCTGCCGCAGCATGTGAAGGACGACGGCGAACTGGGCGCGGCCCCGCATTCGTTCTCTACCGCAGGTGCAGCAGTCAAACTGAAGGGTT TTGACACCGAGCTGAAGGCCGGTGACCTGTTCCTCACCAACCCGGTGATCGCCGGTGGCGAAACCCGCATGCTGCCGCAGACCTTCCGCGGTGTGAGCCT GACCAACACCAGCATCGACGGCTTGCTGCTCGAAGGCGGCCAGGTCAGCTTCACCAAGCCGTACAACCAGAGCGGCCACCGCCGCATCGACACCTACTAC GGCTCGCTGGACGAACACGACAAGAGCAAGCACCTGAACTGGGCCGGCGCAGCGTGGAGCGGTAGCGAAAACATCACCGCCAACCTGTACGCCGCCGAGC TGAAGGACATCTGGAACCAGTATTACGCCGACTTCGACTACACCTATGTGGTCAACGACCTGGTCAGCCTCAACCCGGGTGTGCACTTCTATCACACCCA AGACACCGGCCAGGCCCTGCTGGGCAAGATCGACAACAACACCTACAGCGTGCACTTCACCGTCAACGCCGGGTTCCACAGCGTCACGGCTGCCTACCAG CGGGTCAATGGCGATACGCCGTTCGACTACATCAACCTGGGCGACAGCGTGTACCTGGACAACTCGCGCATGTACTCGGACTTCAACGCGCCCAACGAGC GCTCGTGGAAGCTGCAATACGGCTACGACTTCGCAGGCCTGGGCATCCCCGGCCTGAGCACGACGCTGTCGTACTCGCGCGGCGAGGCAGACCTGACCAA AGCCGACCAGAACAACACCCACTACGACTACTACCGCGCCGATGGCAAGAATGCCATGCACTGGGAGCGTGACCTGGACGTGAAATACGTGTTCCAGGAA GGCGACTTCAAGGACCTCTCGGTGCTGGTGCGTTACGCCGCCCACCGGGGCAGCCAGGGCTATGCGTCGATCGACAGCAACAGCGACAACGACGAACTGC GGGTGATCGTCGATTATCCGTTGAACGTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCACCTATTTTTTGATTTAGCAGGGACCGTGTGGGAGCGGGCTTGCCCCGCGAACACCGGCGAAGCCGGTGCCACGCCTCGCGTAGGGCCATTCGCGGG GCAAGCCCGCTCCCACAGGACTGGCAACGGCACCGCGTGATTCCGTCGGACAAATCTTGTCCGACAATCCCCAGTTCCCTAGAATGGCGCCGCCGCGAAT GGCCCTGCCTCAGCAGTAGCGAGCATGCTCACCCGATCACCGCGTTTCGCACTCTACAGGTCGCACCCCGAGCTGATCCTCAACCTGGGCAGTTGCCTTG CCGTGCTCGCCATCGTGGCCATCGTCAGTTACCTGCTGGCCCGTGAGCGCGAAAGCGTCGAACTGTCGGCCATCCGCGCCTCCAACAACATCGTCCAGCT GATCGAAAGCGACATCCTGCGCAACGCCGAACTTTACGATCAGTCGTTGCAGGGCTTGATCTGGGCGGTCGGGCGCAAGGAACTGCCGGAGATCCCCGGT
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| Amino Acid Sequence |
>porin
MPSAFRFTPLFIALTATIPFAAQADEDKADGFIEGSSLNLHFRNAYFNRDNHNAGARDTREWGQGAVARFESGYTPGVIGFGVDAHAMLGLKLDGGGGHA GTSILPQHVKDDGELGAAPHSFSTAGAAVKLKGFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEGGQVSFTKPYNQSGHRRIDTYY GSLDEHDKSKHLNWAGAAWSGSENITANLYAAELKDIWNQYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFHSVTAAYQ RVNGDTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGLGIPGLSTTLSYSRGEADLTKADQNNTHYDYYRADGKNAMHWERDLDVKYVFQE GDFKDLSVLVRYAAHRGSQGYASIDSNSDNDELRVIVDYPLNVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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