Pseudomonas sp. WCS358, PC358_RS15885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCATCGAACCCACCACCAGTGCGATCAGCGCGCCCAGGCGCAGCTTCTGTCCCGGTTCGCTCATGTGCCTCCCTTTTTTTCACCCGCTGTCATTCGTTT GAAACAGCCATGCCGGCCATATTAAGCGCGGTGGCTTATATGGGTTAACGCCATAAAAGCTATAGCACTCATAACTGCTTTGTCTATGCCAACCCTCTGT AAAAATTAGCAGCTGCCCAGCAACTAGGGAAGGCGCTGTTAAAACTCGAAATTCTTGTGAAAAATTTGCGAAAGCCTCAAAAACGGCTAGCTTCAAGCAG CGCAGGCCGAACAGAGCGTTTGCTCTAGTAGTACATGGAGGTGCCAGCCCACAAGGCCTGCGGCAAAGCTGTCGGCACTCTCCAGGAGCCATGTGAAGGA TTTTTCCTACTTCACATGACCATGAACTGACCCACGTCAGCGAATGGCCCCGGCGTCGGATTTATTCTGTCGTCAACTTTCTCCTGGCAGGAGTTGTTAA
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| DNA Sequence for Gene |
>PC358_RS15885
ATGTCTGATTCATCCGGAAAATTAAAACTCGGTGCGCTAGTTGCACTTGTAGTGGGTTCAATGATCGGTGGCGGGATCTTCTCGCTGCCCCAAAACATGG CGGCCAGCGCGGGGGTTGGCGCGGTGCTTATCGGTTGGGCCATCACCGCGGTCGGCATGCTGACCCTGGCGTTCGTGTTCCAGACCCTGGCCAACCGCAA ACCTGACCTGGACGGCGGGGTTTACGCCTACGCCAAGGCCGGTTTTGGTGACTACATGGGCTTCTCTTCAGCCTGGGGTTACTGGATTAGTGCCTGGTTG GGCAACGTCGGTTACTTCGTGCTGCTGTTCAGCACCCTCGGTTACTTCTTCCCGATCTTCGGTGAGGGCAACACGCCCGCCGCGATCATCGGCGCTTCGA TCCTGCTCTGGGCCGTGCACTTCCTGGTCCTGCGCGGCATCAAGGAAGCGGCGTTCATCAACCTGGTCACCACCGTGGCCAAGATCGTGCCGCTGGTGCT GTTCACCCTGATCTGCCTGTTCGCCTTCAAACTCGACGTGTTCACCGCCGACATCTGGGGCCTGGGCACACCGGAGCTGGGCAGCGTGATGAACCAGGTG CGCAACATGATGCTGGTCACCGTCTGGGTGTTCATCGGCATCGAGGGCGCGAGCATCTTCTCGTCACGGGCGGAAAAACGCGCTGACGTGGGCAAGGCCA CCGTCATCGGCTTCGTCACCGTGCTGCTGTTCCTGGTGCTGGTCAACGTGCTGTCGCTGGGCATCATGACCCAACCGGAACTGGCCAAACTGCAGAACCC GTCGATGGCCGCCGTGCTTGAACATGTGGTCGGCCACTGGGGTGCGGTGCTGATCAGCGTCGGCTTGATCATCTCGCTGCTCGGGGCCCTGCTGTCGTGG GTGCTGCTGTGCGCCGAAATCATGTTCGCCGCCGCCAAAGACCACACCATGCCGGAGTTCCTGCGCCGCGAAAACGCCAATCAGGTGCCAGCCAACGCCC TGTGGCTGACCAACGCCATGGTGCAGATCTTCCTGGTCATCACGCTGTTCTCCAGCAGTACCTACCTGTCGCTGATCTACCTCGCCACCTCGATGATCCT GGTGCCTTACCTATGGTCGGCGGCGTATGCATTCCTGTTGGCACTGCGCAATGAAACCTACGAGCAAGCCTTGGCCGAACGCAAGAAGGACCTGTTCATC GGCGCCATCGCTCTGCTGTACGCCATCTGGCTGCTGTACGCCGGCGGCGTGAAATACCTGCTGCTCTCGGCCCTGCTGTATGCCCCGGGGGCCATCCTGT TCGCCAAGGCCAAGCGCGAGGTTGGCCAACCTGTCTTCACCAACGTGGAAAAACTGATCTTCGCGGCCGTGGTCGTCGGCGCCCTGGTGGCTGCCTATGG CCTGTACGACGGCTTCCTGACCCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCACGTCTTCGCACACATGGAGGAATGAACAATGTCCGCTGAAAAACAGAAGTACGGTGTCCACTCCGAAGCCGGCAAACTGCGCAAAGTGATGGTCTG CTCCCCAGGCCTGGCACACAAGCGCCTGACCCCGAGCAACTGCGATGAACTGCTCTTCGACGATGTAATCTGGGTCGACCAGGCCAAGCGCGACCATTTC GACTTCGTCACCAAGATGCGCGAGCGCGGCGTCGATGTATTGGAAATGCACAACCTGCTGACCGACATCGTGCAAGACAAAGAGGCCCTGAAGTGGATCC TCGACCGCAAAATCACCCCTGACACTGTCGGCGTAGGCCTGACCAACGAAGTGCGCAGCTGGCTCGAAGGCCTTGAGCCACGCCATCTGGCCGAGTTCCT GATCGGCGGCGTGGCAGGCCAGGACCTGCCGCAGAGCGAAGGCGCCGATGTGGTCAAGATGTACAACGACTACCTGGGCCACTCCAGCTTCATCCTGCCA
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| Amino Acid Sequence |
>amino acid APC transporter
MSDSSGKLKLGALVALVVGSMIGGGIFSLPQNMAASAGVGAVLIGWAITAVGMLTLAFVFQTLANRKPDLDGGVYAYAKAGFGDYMGFSSAWGYWISAWL GNVGYFVLLFSTLGYFFPIFGEGNTPAAIIGASILLWAVHFLVLRGIKEAAFINLVTTVAKIVPLVLFTLICLFAFKLDVFTADIWGLGTPELGSVMNQV RNMMLVTVWVFIGIEGASIFSSRAEKRADVGKATVIGFVTVLLFLVLVNVLSLGIMTQPELAKLQNPSMAAVLEHVVGHWGAVLISVGLIISLLGALLSW VLLCAEIMFAAAKDHTMPEFLRRENANQVPANALWLTNAMVQIFLVITLFSSSTYLSLIYLATSMILVPYLWSAAYAFLLALRNETYEQALAERKKDLFI GAIALLYAIWLLYAGGVKYLLLSALLYAPGAILFAKAKREVGQPVFTNVEKLIFAAVVVGALVAAYGLYDGFLTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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