Pseudomonas sp. WCS358, PC358_RS12015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS358 WCS358-Sc1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAAACCGCGTGCACCTAACTGGATACAGCGACGGCATACCGAATCGGCAGGTTGCGAAGTCAGGATAAGCACCTTGCTACGCACATCTAGCGTTTTAAT CTTGGTGATAACGGTAAACCCATCCAGTTTGGGAATACCAATATCGAGAATGACCACCTGCGGGTTGAGCTCGCGTACCAGCTGAACCGCATCCAGGCCA TTGTCCGCTTCGCCCACCACGCGCATGCCGTGCTTTTCCAGCAGCACCCGGACTGCAAGTCGAATGACTGGATGATCGTCAACTATCAGAACGCTATGCA TAGTGTGAATCTACCTTGAGAACGCGCTTGTTACGGAACGGTATCGATAAGCCACTAGCAGGTTATCACCATTAGCTGCGTAGGACAGAGCTGTACTTGC TTCGGAAATTTCCGATGGATGAGAGGAAATTTCCCATGGAGGTGTCAGATGCGAGCCTTGCAGACTGTGGCTCCTTCAATTGCGTGCGTGTAGACCTGCG
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| DNA Sequence for Gene |
>PC358_RS12015
ATGCAAGACTTGACTGTTCTGGTGCTGGAGGATGAACCCTTCCAGCGCCTTGTCACCGTGACTGCACTGGAAAAAGTGTTGCCGGGGCCCATTCTGCAAG CGGCGGACGGCCACGAGGCCGTTGCTGTGCTGTCAGCCTGCGACGCGGTAGACATTATTATCTGTGACTTGAGAATGGCTGGCATGGACGGCTTGGCGTT TCTTCGCCAAGCCAGTAGCAGCGGCAAAATTGGGGCTGTGGTGCTATGCAGCGAACTGGACCCGGCGCTGCGTCAAGCCACGGTCGCGATGATCCACTGT CTGGGCCTGACTTTTTTGGGCGACTTGGGCAAGCCTTTCAACCTGGAAGGATTCAGCCAGGTGGTCAAACGCTATAGGGAACACTGCAGCGCCGCGCCTA AAGTGTTGTCGCCGGCAGAGCTCCCCACGCTGAACGATGTGCAGCAAGGCTTGGACAACGGAGAGTTCGAGGCCTATTACCAACCCAAATTTACCCTGCA GGGGCAGCAACTGGTTGGCGCAGAAGTGCTTGCACGCTGGACGCACCCTCAATGGGGGGTGCTGCCACCCGCACATTTTTTACCGGTGATGGAAGCGCAC AACCTGATCAACCGCTTGTTCTGGCAGCTGTTCGAACAGGGCCTGTCTCTTCAGCAAAGGCTGGCAGCGCAGCGCCAGGGGATCGACCTGGCGTTCAACT TGCACCCGGCGCAGCTGGCGTGCGCCGCGTTGACTGAGCGCATCACCCTGCTGATCAAGCGGTCACAGGTGCCAGCGGCCAGCGTGACGTTCGAAATCAC CGAGTCTGGTCTCATCAGTGCACCTGCCAGAAGTCTGGAAAACTTGGTGCGGCTGCGTATGCTCGGTTGTGGCCTGGCCATGGATGATTTTGGCGCCGGT TATTCTTCACTGGATAGACTAAGTGAACTGCCATTTAGTGAAATCAAGCTTGACCGGGCGTTCGTGCGCAAGATGCAAAACCAGCCCAAGAGCGCTGCGA TTATCAGTTGCTCGGTGGCGCTGGCCCGGGCGTTAGGCATCTCGCTGGTTATCGAAGGTGTAGAGACCGTCGAGCAACAGGCTCACCTGATTGAGTTGGG CGCCACCCTTGCCCAAGGGTTTTTGTTCGCCCGGCCGATGCCGGAAAGCCACTTCATCGACTTCTGCATGCAGCGCAGGTTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCAGGTCCTCATGAACGAGCGACGGCAACCACTTTGAACTATTATTGCGCCGCCACTGGCGGCGATCCCCAGGCTCCTTCGGTTTCTATCTCGCATGCA TTTACGTTCTTTCTGCCTGTCCATCGGCCTACTGTTGAGCAGCGTTCCGCTGCTGGCTGCCACCCTGCCTTTGGCCCCGCAGGTGTTGTCCAGCCAGCTG CGTATCGATCGTCACGATATGGCGATCACGACTGAAGACTGGCATTGGCTGCGGCACAAGGCTGAGCTCAAGGTGGGTGTGTATGCAACCGAGTCCGCGC CGTTTTCAGTCTATGCCCAAGATAACCTGTACGAAGGCATCAGCGCCGATGCAACCGCTCTGGTCGCTCAACTCTTGGGCTTGCAGGTGAAGGTCGTTCC CTTTGCTAATGAGCAGGACGCGCGCAAGGCATTACAGGCCGGTAGTGTCGATGTCATCAGTATTCACGGCAGTACAGAGCCTCGCCCCGACCTGCTGCTG
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MQDLTVLVLEDEPFQRLVTVTALEKVLPGPILQAADGHEAVAVLSACDAVDIIICDLRMAGMDGLAFLRQASSSGKIGAVVLCSELDPALRQATVAMIHC LGLTFLGDLGKPFNLEGFSQVVKRYREHCSAAPKVLSPAELPTLNDVQQGLDNGEFEAYYQPKFTLQGQQLVGAEVLARWTHPQWGVLPPAHFLPVMEAH NLINRLFWQLFEQGLSLQQRLAAQRQGIDLAFNLHPAQLACAALTERITLLIKRSQVPAASVTFEITESGLISAPARSLENLVRLRMLGCGLAMDDFGAG YSSLDRLSELPFSEIKLDRAFVRKMQNQPKSAAIISCSVALARALGISLVIEGVETVEQQAHLIELGATLAQGFLFARPMPESHFIDFCMQRRL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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