Pseudomonas sp. WCS358, PC358_RS02110

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. WCS358 WCS358-Sc1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGTACTAACCGCGACCTGCCGCTGGCGTTAACCGTCGACGACATCAATGTGACTTCCGAGGTCACGCCGCCCTTGGCCACCTACACCAACCTCTGTCCTC CCACCCGCCCCTACCGGCCGGTACTGGACGGCCAGTTGCAGTGGGCCCTGATTTCCAACATGTCGCTCAACTACCTGTCGCTGCTCTCGGCCGAGCCGCT GAAAGCGGTCATCAACGCCTATGACTTCGCTGCCCTGCATGACATTCAGCAAACCCGCACCACCCGCAAACGCCTCGATGGCATCCGCGATGTTCAAACA GAACCCCTGGATTGGCTGATCAAGGGCCAGCCCATTCGCGGCTTGCGCACACGGCTGAAGCTGGATCAAAGCGCATTCCTCTGCGAAGGCGACCTGTACC TGTTCGGTTGCGTGCTCGCACACTTTTTTGCCCTGTACGCCAGCATCAACTCCTTCCACCAACTGGAAGTGATCAACACCACCAATAACGAGCACTACAC
DNA Sequence for Gene
>PC358_RS02110
ATGGCCCATCCAGACCGGCAAACAACCGCTGATCTAGCCGACAAGCTGCTCGCCGAGGCGCACCAGTACAACTTCTTCCAGTTGCTGGAACGCCTGCACG GCTTGCACGGGGATGACCTGGAACCGCGTTGGCCAGCCCCCACCGTACGCCGGCGCGTGCGGCTTGCCAGCGACCCGCGGCTGACCTTTCCCGTGTCCGA CGTGTACAAGGCCGAACGCATGCCTGGAGCAGAAGATCGCTACCGCGTGTGCACCACGTTCATGGGGCTGCACGGCACAGACTCGCCCTTGCCAACCTAT TACCTGGAAGAAGTGTCGTACGAGCATGCCCACGGCATCGGTGTGCGGCCAGCCTTCTTCGACTTCTTCAACCACTACCTGCTGAGCCTGTTGCACCGCA TCTGGCGCAAGTACCGCTATTACATCCGCTTCCAGCCGGGCGCGACCGATGGCTTCTCGCAGTACATTTTTGCCCTGCTCGGCTTGAACGACAAACAGCT GCGCGGCGACACCCCGCTACCCTGGAGCCGGCTGCTCAGTTTCGCCGGGGTCATCGCCAGCCGCAGCCGTGCACCGGGCACGGTCGCCGGCATCATTGCC CACTGTTTCGACTTGAAGCAGGTGCACATCCGCGAGTTCGAAACACGCTCCGTCCCTACCATGGCCACGCAACGGGTGAGCCTTGGCCGCAGCAACGGCG AACTGGGCAGCTCGTTCATGGTCGGTAGCCGCACGCGAACCCGCAGCAGCAAGTTCACCATCGTGATCAGCGAGCTTGATCAGGAACAGTTGCGTGACCT GTTGCCCAGCGGCATCAACTTCAATCGCTTGCGTGCTCTGATCGACTTCCTATTGCGTGATGGTCTGGCCTACGACCTGGAACTGCGCCTGAAGCAGAAC GCATTGTCGCCCTTCTGCCTGCACCCTACCAAAGGCGCCTACTTGGGCTGGACCAGCTTTGTCGATGATCGCCACGGCCAGATCAGCCCTGTCGTGCGAT TCCGGGGGCGCTCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCACATTGACCTTGAGCATCACCAACCTTGATCAGTTGCAACACAACGTCACTGGGCGACACCAGTTCGATTGCACAGGCGGCACCATCGGCAGCGCCAG CGCCACTTGGCGGATCAACGATCGGGAGCAGACCGTTGCACCGATTCACTGCGAGATTCGCTGGATCGAGGGCAGCTTCTGCGTCATTGACCGCTGTCAG CGGACCTACCTGAACGACAGCCACGACAGCTTGGGAGCGCTCGCCCCCAGACGACTGCTGGAGGGTGACCAACTGCGCGTTGGCGCCTATCGACTACAGG TTCAACTTGCGCAGGCCGATGCACGCTCTCTGGAGGACCTGTTCAGTCCTGAACAGCGAACCCTTGATCACTGGCTAGTAGAGGTTCCAGCCAACGCCCG GCAACCCACTTCAAGCGCCACGCAGGTTGTCGCAGACATCTGCTCGGCCTTCGCGCCAGGTATCGGCAACGATCCCTTGGCGGCACTGAACACAGTGACA
Amino Acid Sequence
>type VI secretion protein
MAHPDRQTTADLADKLLAEAHQYNFFQLLERLHGLHGDDLEPRWPAPTVRRRVRLASDPRLTFPVSDVYKAERMPGAEDRYRVCTTFMGLHGTDSPLPTY YLEEVSYEHAHGIGVRPAFFDFFNHYLLSLLHRIWRKYRYYIRFQPGATDGFSQYIFALLGLNDKQLRGDTPLPWSRLLSFAGVIASRSRAPGTVAGIIA HCFDLKQVHIREFETRSVPTMATQRVSLGRSNGELGSSFMVGSRTRTRSSKFTIVISELDQEQLRDLLPSGINFNRLRALIDFLLRDGLAYDLELRLKQN ALSPFCLHPTKGAYLGWTSFVDDRHGQISPVVRFRGRS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site