Pseudomonas sp. WCS374, PD374_RS00560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS374. [Details] | |
| DNA Sequence Upstream of Gene |
CGGGACCTGCCGCTGTTCATGAGCGTGGGCAACGGCAAGACCGACTTCACCCTGGCCGACAGCGCGCCGGTACTGGCCGTGCGATGCGTCGCCGGGCCAA GCCGCCCGCGTGCCAGCCACGCACATGACGCCAAGGCCTGGCGCCTGATCAGCCAGTTGTCGCTCAACTACCTCTCCTTGAGCGAACAGGGCCAGGGCGC CGGCGCCTTGCGCGAATTGCTGCGCCTGTACGGCGACAGCAATGACGCCGCCCTGCAATTGCAGATCGAAGGCCTGCGCGAAGTCAGCAGCAAGGCGGTG ACCCGACGCCTGCCGATGCCTGGCCCGATTGTGTTTGGCCGCGGCCTGGAAATCACCCTGGAGTTCGATGAAAACGCGTTTCGCGGCACCGGCGTGTTCC TGCTCGGTGCAGTGCTGGAGCGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCG
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| DNA Sequence for Gene |
>PD374_RS00560
ATGGAAAGCCAAGCCCGGACGGCGTCCGACCCTGTGAGAACCCTGGACGCGATGCACCAGGAGCCCTGGGAATATGACTTCTTCCAGGCATTGCGGCGCA TCGAGTGCGAAACGCCCGAGCTGCCACGCCTGGGCCATTCCCTGCGCCTGGCCGATGATCCGCTGCGCCTGGGGCAGCAGGCCGATTGCATCTTCGCACC CGCCACCCTCGCCTCGGTCGCCCCCGGTGGCGACGGCAAGCCGGCGCGGTTGGAGCAGTTCTTCTTCGGCCTCGGCGGCCCCAACGGGCCGCTGCCGCTG CACATCACCGAGTACGTGCGCGAGCGCCAACGCAACAACGCCGACAGCACCAGCAAGCAGTTCCTGGATGTGTTCCACCATCGCTTGTTGACCCTGTTCT ATCGGGCCTGGGCCGAGGCGCGGCCAACGGTCAGCCATGACCGCCCGGACGATGACTACTGGTCCGCCCGCCTCGCCGCCCTGAGTGGCCGCGGGATGCC GAGCCTGCTCAATCAAGGGCTGATCCCCGATACCGCGAAGCTGCATTACAGCGGCCATCTGTCGGCGCAAACCCGTTACCCGGATGGCTTGAAAGCGATC CTCAGCGAGTACTTCGGCCTGCCGGTAGAGATCGAGGAATACGTCGGCCAATGGCTGGAACTGCCCGAACGCAGCCGCGTGGGGGTCAGCGCCAACCAGT TGGGCGTGGACTTCTGCCTGGGCAGCCACGTATGGGACCGCCAGCACAAATTCCGCATCCGCCTGGGCCCGCTCACGCTGGATAACTACATGGGCATGCT GCCCGGCCAACAGCCGTTCAACGAGCTGGTGGCGTGGGTGGCCGAGTACCTGGGCCATGAATTGGACTGGGACTTGAACCTGGTTTTGCAACAACCCGAA GTACCGGCGCTGCAACTCAACGGCCAGTTCCGCCTGGGCTTCAACACCTGGCTCGGCCAACCTGCGCATGACGCCAACGACCTAATCCTGGCCCGGCATT ACGCCGACCACGCCACCACCTCAAGGAATCCAGAGCATGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGTCGCGCCGCACTGTTCGGCAAACTCAACAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTTCTGCAAATTACGGGGCAATCCGTATGTG GAACTGGCCCACTGGTTTCACCAGTTGCTGCAACTGCAGGACTCGGACCTGCACCGCATCATCCGTCAGTTCAACGTGGAGCCGGCGCGCCTGGCCCGCG ACCTCACCGAAGCCCTGGATCGCCTGCCGCGTGGCTCGACGTCGATCACCGACCTGTCCTCCCATGTGGAAGAAGCCGTGGAACGCGGCTGGGTGTATGG CAGCCTGATGTTCGGTGAAAGCCAGGTTCGCACCGGTTATCTGGTGCTGGGCATCTTGAAGACACCGAGCCTGCGCCATGCGCTGCTGGGCCTGTCCGGC GAGTTCGACAAGATCAAGGCCGAGGCCTTGAGCGAGCGCTTTGACGAATACGTCGGTGACTCGCCGGAAAATGCCTTGAGCGCCAGCGACGGTTTCAATG
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| Amino Acid Sequence |
>type VI secretion protein
MESQARTASDPVRTLDAMHQEPWEYDFFQALRRIECETPELPRLGHSLRLADDPLRLGQQADCIFAPATLASVAPGGDGKPARLEQFFFGLGGPNGPLPL HITEYVRERQRNNADSTSKQFLDVFHHRLLTLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRGMPSLLNQGLIPDTAKLHYSGHLSAQTRYPDGLKAI LSEYFGLPVEIEEYVGQWLELPERSRVGVSANQLGVDFCLGSHVWDRQHKFRIRLGPLTLDNYMGMLPGQQPFNELVAWVAEYLGHELDWDLNLVLQQPE VPALQLNGQFRLGFNTWLGQPAHDANDLILARHYADHATTSRNPEHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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