Pseudomonas sp. WCS374, PD374_RS11960
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS374. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAACCATCGGTGGGTTTGTGCGGAGCGTTATCGCCATTCCAGATTTCCGGCCAGCCGAAGATCGTCAGCGCGGCGCCCGACAATCGGCCGCGGGCGGC CTTGGCCAGGTCGAACTGGCCGCTGCCATCCTTGTCGGCCTCATTGCCCGCCGTGCCGAAATCCAGGGGCAGGGTGATGTGGCTGTCAAATGACAACAGG CGGTCCTGCATTTCATTGGCCTGCTTGATCACCTCCAGCGAGTAGCCGGCGTTGCCCTTGAACCACTGATCCCAGACCAGCAAGCCAGCCCCGGCGCCGA TAGCCAGGGCCAGCGGCAGGCCGATATACAGCGCCTTTTTCGAACGTGATTTTGTCATTGCCATCTCAGTCAGTTGAGGCCTTTGCTATCAGGGAAGGAC GAGCGATGACGGGGGAAATTTAGGTGGCGGGGGCAGGGCGGTAAATTTCATCGGGTTGCAAACGTTCTAGCTCTGATCAAGCCGTTTCCTAAGGTAGCCA
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| DNA Sequence for Gene |
>PD374_RS11960
ATGACAATCTCTCGACGTGGGTTCATCGCAGGCCTGGCGCTGACCGGTGCAGCGGTGCCTGCGGCCTTTTATGCCCATCGCGAGTTGACGCGGGAAGACG AGTTTCCCATCACCCCCGGCGAAGCTACGGTCGACCTCGCTGACACCCAGGGCCAGCACCTGGCGAACACCCTGCGGGGCGTCTGGAGCCTGCGCCTGGA AGGCCGCGATGCGGGCCTTGCGGGCCTGCCGCTGCAAGGCCTGGAGTTGCTGCTGGACATCGCTCCCCGTGGGCGTGGCCTGCGCGGTTACCTGGACACC GCCGAGCAGCTGCGTGCGGACGGCGAGCCGCGCTACCGCGTCTTGGGTGATGTGCTGACGGGCGAGGGCGCCGTGCTCTATTGGCGCTTGATCGACCGCG ATTCCGCCGGCGGTGTGCCGGCCTATGAATTCAAAATGACCCTGGATGAAGTCTGGGCCGATTTCAGCAATGCCGGCAGCGCCACCCTCAGCGGGCACAT CCTCGATCTTGAGCGGCCCTTGGCGCTGACCGAACGCGACAACCGTTTTATCGCCCACAAACAACTGTTCCCCGAAGCCCGCCAGCGCATCGGTCTCAAC CCGACCTTGCTGGCCTGGCTGGTTTCCCCCGAGCATCGGCTGTTTCACCAACTGTGGCACGCCACCCGCGATCAGTGGCACAAGCTCTCCGAAGAAAAAC GCGAGGCCCTGCGTGGCATCGGCTGGCAACCGGGGCCCCGTGGCCAGGAGCGCGACGCCCGCGGCAAGCGCAAGGACCGCAATGGGTCGGGCATCGACTT CTTCTTCATGCACCGCCACATGCTCGGCACCGCACGTTCCATGCAGGACTTGCCCTCCTGGCCGCAATTTCCCGAGCCGCAACCGCCGTTGGAGCGTGAT CGCCTGGGCTTTGTGCGCTACTTCGACAACCACGACGGTTTCGCGCTGCCGCCCTGTTGGTCAGCGCCGGATGATGCCGACTACACCCAGTGGGTCAGCG ATATCAAGGCCGCCCAGACCTACCACAGCAATTTCCAGGTGTGGGAATCCCAATACCGCGACCCGCGTTACCTGGCCAAGTTGACCCTGGGCCAGTTGGG CTCGGAAATGGAACTGGGCCTGCACGACTGGCTGCATATGCGTTGGGCCTCGGTGCCCCGCGACCCGTCCAACGGCGCCCCGGTCCCCTTCGCCCGTGAC CCCGCGGACTTTGCCCCACGTTGGTATGCGCCGGAGAACGACTTTCTGGGCGACCCGTTTTCATCCCATGTAAACCCGGTGTTCTGGCATTTCCACGGCT GGATCGATGACCGCATCGAAGACTGGTTTCGCGCCCACGAGCGCTTCAACCCAGGCGAGGTGAGCCGCCTGGAAGTCAACGGCGTAGCCTGGTTTGCACA GGGCCGCTGGGTTGAAGTAGGCGACCCTTGGCTGGGACCGGACACCCATGGCTGCAGTACCACACCGGGGCTGCAACAAGGGCGTTCGATGGAAATGGAT CCGGAAGTCATGAAGCTGGCCCTGCGCATTACCTTCGGCGCCGATGAGGAGGTGCTCAAGGGGTTGTTCAAGCGCGTGCCGCGGCGGCCGTGGTATGCCC GACATTTGAAGGTCACGCACACGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACATGTTGCAGGCGCTCTAGGTCACCGATATCGCTGCCGAATACAGCCCGCTGACACTTCGAGGATCCCCTATCTTGTTGATCAGGTATAACTCGTTGA ATTCAGACACTGTGTACCCATCGGCCTTTTTGAGCGGCTGGAACAAATGGCTGGTCTGGCCACTATTGAGTGCACGCTCCATACCGCTGCGCATGTCCGC CTCCTTGGAGAATTTGACGAGCCCAAAGTTGGGGTCATAGTAAAACCAGATCTTTTGGTCCTTCGTGATTTTGACGCCAGCGGTAACACCGTGCTTTGAA TTGCTGATAAGAAAGGCTTTGGAGGTGGTGGCCGTTGCCAAATCCGAGATGATCCTGTCGCAGGTCGCACTGCGGGTGAGCTGCCCAGAGTGAAAATCAT CTCTAAGGGTGTTTTGAAATCTCTCCAGGCTGTCGCGGAACCTTTCAGTATTAGGGTGTTTGGGGTGCGCCAGACTGAGGAAGAAGTTGCTGATCAAGGT
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRGFIAGLALTGAAVPAAFYAHRELTREDEFPITPGEATVDLADTQGQHLANTLRGVWSLRLEGRDAGLAGLPLQGLELLLDIAPRGRGLRGYLDT AEQLRADGEPRYRVLGDVLTGEGAVLYWRLIDRDSAGGVPAYEFKMTLDEVWADFSNAGSATLSGHILDLERPLALTERDNRFIAHKQLFPEARQRIGLN PTLLAWLVSPEHRLFHQLWHATRDQWHKLSEEKREALRGIGWQPGPRGQERDARGKRKDRNGSGIDFFFMHRHMLGTARSMQDLPSWPQFPEPQPPLERD RLGFVRYFDNHDGFALPPCWSAPDDADYTQWVSDIKAAQTYHSNFQVWESQYRDPRYLAKLTLGQLGSEMELGLHDWLHMRWASVPRDPSNGAPVPFARD PADFAPRWYAPENDFLGDPFSSHVNPVFWHFHGWIDDRIEDWFRAHERFNPGEVSRLEVNGVAWFAQGRWVEVGDPWLGPDTHGCSTTPGLQQGRSMEMD PEVMKLALRITFGADEEVLKGLFKRVPRRPWYARHLKVTHTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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