Pseudomonas sp. WCS374, PD374_RS14390 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006310 | DNA recombination |
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003910 | DNA ligase (ATP) activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13298 | DNA polymerase Ligase (LigD) | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 39 | 143 | 6.4E-39 |
| CDD | cd04862 | PaeLigD_Pol_like | IPR033651 | LigD polymerase domain, PaeLigD-type | 562 | 788 | 5.62991E-130 |
| NCBIfam | TIGR02778 | JCVI: non-homologous end-joining DNA ligase, polymerase domain | IPR014145 | DNA ligase D, polymerase domain | 545 | 789 | 8.7E-89 |
| Gene3D | G3DSA:3.30.470.30 | DNA ligase/mRNA capping enzyme | - | - | 240 | 355 | 4.0E-44 |
| Gene3D | G3DSA:2.40.50.140 | - | IPR012340 | Nucleic acid-binding, OB-fold | 401 | 519 | 2.9E-39 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 520 | 539 | - |
| PANTHER | PTHR42705 | BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD | - | - | 244 | 827 | 2.2E-108 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | IPR012340 | Nucleic acid-binding, OB-fold | 402 | 520 | 1.93E-28 |
| Pfam | PF01068 | ATP dependent DNA ligase domain | IPR012310 | DNA ligase, ATP-dependent, central | 219 | 398 | 7.0E-22 |
| Gene3D | G3DSA:3.30.1490.70 | - | - | - | 228 | 396 | 4.0E-44 |
| NCBIfam | TIGR02779 | JCVI: non-homologous end-joining DNA ligase, ligase domain | IPR014146 | DNA ligase D, ligase domain | 218 | 516 | 7.7E-106 |
| CDD | cd07971 | OBF_DNA_ligase_LigD | - | - | 402 | 516 | 1.9581E-53 |
| CDD | cd07906 | Adenylation_DNA_ligase_LigD_LigC | - | - | 216 | 400 | 5.43047E-79 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 27 | - |
| SUPERFAMILY | SSF56091 | DNA ligase/mRNA capping enzyme, catalytic domain | - | - | 205 | 399 | 1.99E-45 |
| Gene3D | G3DSA:3.90.920.10 | DNA primase, PRIM domain | - | - | 552 | 834 | 3.9E-98 |
| NCBIfam | TIGR02776 | JCVI: DNA ligase D | IPR014143 | DNA ligase D | 228 | 818 | 0.0 |
| Pfam | PF04679 | ATP dependent DNA ligase C terminal region | IPR012309 | DNA ligase, ATP-dependent, C-terminal | 417 | 511 | 1.8E-24 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 17 | - |
| NCBIfam | TIGR02777 | JCVI: DNA ligase D, 3'-phosphoesterase domain | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 5 | 164 | 3.4E-70 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.