Pseudomonas sp. WCS374, PD374_RS15205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS374. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGTACCGGGTCAACGTTACGGTACGCCCGCATTTCAAATACATGGGGGCAGACTTCACGTTGTCCCTGGTCGGGAAGCTCGATAAAGAATGAGCAGA AGCCAGGGCATGCTTGAGCACAACAGCCTTTTCGAACGCCTCGAGCAGGGGGCGTCTAACCCGGGTGCCACCGTGGCGTCCATCGCCGCACATTTGGGGA AAATGCTCAGCACTCGTGCGGGCAGTGTCCAGACGCTGCCTGATTATGGCTTGCCTGACCTCAATGACATGCGGCTCAGCTTGCATGAGTCCTTGAGCCA GTCGCGGCTGCATATCGAACGTTTTATCCAGGCCTATGAGCCGCGGCTGACGAACGTACGTGTCAGGCTGTTGCCGGTTGTGCGTGACTCCTTGTCCCTG GCATTCGCCATTGAGGCTGAGCGGATGATTGAGGGCGTACTGCATCCTGTAGTGTTCCACGCGCGCCTCACGGATACCGGGCGGGTTGAGGTCTGTGCCA
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| DNA Sequence for Gene |
>PD374_RS15205
ATGACGCTTAACCGTTATTTTCAAAGCGAACTCAGTGCGTTGCGCCAACTGGGGCGACGTTTTTCCGAACGTAATCCCGCCCTGGCGCCGTTTCTCGGCG AAGCGGGCCAGGACCCGGATGTCGAGCGCTTGCTGGAGGGCTTTGCATTCCTGACCGGGCGCTTGCGTCAGAAGCTGGATGACGAACTGCCGGAGTTGAC GCACTCGTTGATGCACTTGCTCTGGCCCCATTACATGCGCCCGATACCGGCCTTCAGCATCTTGCAATTCGACCCGTTGAAACGCGCCGGCCCAAGCGTT CGGGTGGCTCGGGATACCGCCGTGCAAAGCGCTCCCATCCACGGTGAGCGTTGCCAGTTCCGTACATGCTATCCCACCGATGTCATGCCATTGCAACTCA CTGACCTGGAATACAAATGCCAGGGCGAAGGGGCCTGGTTGGCTTTGCGCCTGTGCATGAGTGTCGACGGCAGCTTCAGTGAGTTGGAATTCGATTCGCT GCGACTGCACCTGGCCGGCGACCACTACATCAGTCAGGGCCTGTACCTGGGCCTATTGCGCCATCTGGCGGGAATCAGCCTGCAGCTCGTGGATCACGAT GGCCTGCCGATCAGCGCCGGCGATGACCAACCCCTGACGCTGCGGCTCAATGCCAACCAGGTCCGGCCAGTGGGGTTTTCCCAGGAACAGGCGCTGATTC CTTATCCGCAGAACACGCTGGAGGGCTATCGGCACCTGCAGGAGTACTTCGCGTTTCCCGAGAAATACCTGTTTGTCGATGTCGAAGGCTTGGAGGTGTT GCACACGTTGTCTCACGAGTTGCTCCGGCAGGCGCACGGCCTGGTGATGCGTTTCGAGCTCCGCAGTCAGGGCCGCGAGCCCCTGCGTCCTACCTTGGAT AACGTAAAGCTGTATTGCACGCCCATCGTCAACCTGTTTACTCAGGATGCAATTCCCATTCGCCTGGACGGTAAACAGGACGAGTACCTTTTGGTACCTG GGGAATACACGCCGGGCAATGCCAGCGTGTATTCAGTGGACCGGGTCACCGGCTGGCGCCCCGGTGGCTTGGGCTATCAAACCTACGTGCGGTTCGAGTC GTTTGAACATGACTGCCACAGCGAGCCTGTGGCGGCACCGCCCAGCTACAGCATTCGCCAACGTTCGTCGGTTCAACATGGTGGACTCGACACCTGGATG GGGTTCGGCAATCGCCGCAAACAGGGCCAGGAAACCCTGTCGGTCGAACTGACCTGTACCAATTGCAACCTGCCACGGCAATTACGTGCAGGCGATATCA ACCAGCCCGGCGAACACACACCGGAGTCGTTGACGTTTCGCAATATCACCGCGCCAACGGCGAGCTACGCACCGCCCCTGGACCAGGATTTCCTGTGGAA TCTCATCAGCAATATGTCGCTCAACTACTTGTCGTTGACCGACATCAACGCCTTGAAGGCGATTCTCGCAACCTACGACCTGCCGCGTTATTACGACCGC CAGGCGCTGAAGGTCAGCCAGAAAAGACTGGCGGCTTTGCGCGCCATCCATCATGAGGCGACGGATCGCCTGCATCGTGGGTTGCCCGTGCGAGGGGTGC GGGTCGATCTGACGGTCGATTCCCAAGGCTTTGTCGGCCAGGGCGACTTATTTGTATTCGCTTCGGTCCTCAATCAGTTCTTTGCGCTTTATGCCAGCCT CAATTCCCATCACGAGTTGCGTGTCATCAGCACACAAGGAGACGTGTATTTATGGCCATCCCTGACGGGACAACAGCCCCTGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCAACTTTGCCGTGGTATCCGTGAATACACGTTGTTCCAGGCGGTTTTGCAGGTGATCGAGCGATTGCGTGAGGCTCATCCGCTGCTGGATGAGGACGC GTTGTACGACCAGTTGGAGTTCCAGGCCAACCCTGGCTTGGGCTTTGCCGCGCACGATATCGACCGAGTGGAGTTCTTTATGGAGCATGGACATTTGCGC GCACGCCTGCGCCTCAATGTACTGGGGTTATTTGGCGCCGGGTCCCCACTGCCTGCGTTTTATGGTGAGCAGGCATTTGCCGAGCAGCCAGGCGGCAACC CGACTCGAGATTTCCTGGATATGTTCCATCATCGCTTGCACCGGCTGATGCTCCCGATCTGGCGCAAGTACCGCTATCGGGCGTGTTTCTGGGCAGGCGC CAGTGATGGTTTTTCCGAGCAGATGTTTGCCTTGACGGGTCTGGGCGGCACCGCAATCCGTGGCGCTTCCCAGCTCGATTGCAAACGCCTGCTGCCCTAC
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| Amino Acid Sequence |
>type VI secretion protein
MTLNRYFQSELSALRQLGRRFSERNPALAPFLGEAGQDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPHYMRPIPAFSILQFDPLKRAGPSV RVARDTAVQSAPIHGERCQFRTCYPTDVMPLQLTDLEYKCQGEGAWLALRLCMSVDGSFSELEFDSLRLHLAGDHYISQGLYLGLLRHLAGISLQLVDHD GLPISAGDDQPLTLRLNANQVRPVGFSQEQALIPYPQNTLEGYRHLQEYFAFPEKYLFVDVEGLEVLHTLSHELLRQAHGLVMRFELRSQGREPLRPTLD NVKLYCTPIVNLFTQDAIPIRLDGKQDEYLLVPGEYTPGNASVYSVDRVTGWRPGGLGYQTYVRFESFEHDCHSEPVAAPPSYSIRQRSSVQHGGLDTWM GFGNRRKQGQETLSVELTCTNCNLPRQLRAGDINQPGEHTPESLTFRNITAPTASYAPPLDQDFLWNLISNMSLNYLSLTDINALKAILATYDLPRYYDR QALKVSQKRLAALRAIHHEATDRLHRGLPVRGVRVDLTVDSQGFVGQGDLFVFASVLNQFFALYASLNSHHELRVISTQGDVYLWPSLTGQQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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