Pseudomonas sp. WCS374, PD374_RS17445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS374. [Details] | |
| DNA Sequence Upstream of Gene |
CCCACCGCGAAGTTCGGATGCTTCGAGGCAATCACCTTGCCTACGCCCAGGGCGCGCATCACTTCGCCGATGCCTACTGGTGGGATGTAGGACTTGCCTT CATTCATCCAGCCACGCATGGCCGGGTCGAGGGACAGGTATTCATTGCGCACCAGCACCTGGCCTTCCTGGGGTTCGCCCACCGGTACTTCCTGGTAAGT GAAGGTCTCGCGCGTGGCGGCACCGACCGGGCGTTTGGCGAGCAGAAATTGGCGGTTGGTCTGGGCGGTCATGGCAAGGACTCTTTAGAAATGGAACATG AGTGATAGACCCTCAGTGGCAGAAGGGCAAGGGTGTGCGGCGCAGGCGAATGCCCGGCAATAGGCCTCATTGATAATCAGCCGGTCCGCTTTATCACTGC GATTCATGCAGCGCCAACCGGCCTTCTGATAGTGCTGACGTGCGGCTCCCGACGTTGGCTAGACTCGCTCCATCGCTACTAACCCCACAGGACAGTTCCC
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| DNA Sequence for Gene |
>PD374_RS17445
ATGAGCATGACGTTTTCCGGCCAGGTCGCCTTGGTGACCGGCGCCGCCGCTGGTATTGGCCGCGCCACCGCGCTGGCATTCGCCGCCGAAGGCTTGAAGG TGGTGGTCGCTGACCTTGATGTGGCGGGAGGTGAGGGCACTGTGGCATTGATCCACCAGGCCGGTGGCGAAGGGATATTTGTGCGCTGCAACGTCACGCT CGACGCGGACGTGCAGCAATTGATGGCTCAGACCGTCGCCACCTATGGACGCCTGGACTACGCCTTCAACAACGCCGGCATCGAGATCGAGAAGGGCAAG CTGGCCGACGGCAGTCTTGATGAGTTCGATGCGATCATGGGGGTTAACGTCAAAGGCGTGTGGCTGTGCATGAAGTATCAGCTGCCGTTGCTGTTGGCCC AGGGCGGTGGGGCCATCGTCAACACCGCATCGGTGGCGGGGTTGGGGGCGGCACCGAAGATGAGCATCTATGCGGCGTCCAAGCATGCGGTGATCGGGCT GACGAAGTCGGCGGCCATCGAGTATGCGAAGAAGAAAATCCGCGTGAATGCGGTCTGCCCGGCCGTGATTGATACCGACATGTTTCGCCGCGCCTATGAG GCCGACCCACGCAAGGCTGAGTTTGCCGCCGCCATGCACCCGGTCGGACGCATTGGCAAGGTTGAGGAAATCGCCAGCGCCGTGTTGTACCTGTGCAGTG ATGGCGCAGCATTTACCACCGGTCAGGCCCTGGCGGTGGACGGCGGCGCGACAGCGATCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACGGCAGGTCGCGTGGCATTCGAAAACAGAGCCAGGTGCTGTGGGGCGTTTCCATGGCGGGCAGTGGGCTGCGCCCGAATATGTTTCACTAGGTAAATA ACCCAATAAAATCAATACTTTAATAAAAGTTGGCGGCCGGTTTTACTGAGCTTCTGTGCTTAACTGTTTTGGGTTAACAGACAGTTGAAGTGAGTGGCTC ATGGATTTAGGGATCGATCGACAAGCCCTGGTACCGGTTGTTCAGCAGATCGTCAGCGCGGTGGCAGAATGGATTCGCAAGGAGGGGGTGAGCCCTGGCA CACGCTTGCCGTCCATTCGCCAATTGGCCCTCGATAACCTGCTGAGCCAGGCCAGTGTGATCGAGGCATTCGAACGATTGGTGGCCCAGGGGCTGCTGGC CCCCCGACATGGCTCGGGGTTTGTGGTGGCGTCACCCACGACGGTCCACGAAAACCATTGGTATGAGGGTGCGGAACAGGGCTGGGGGGCATTTACCGAT
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| Amino Acid Sequence |
>short-chain dehydrogenase
MSMTFSGQVALVTGAAAGIGRATALAFAAEGLKVVVADLDVAGGEGTVALIHQAGGEGIFVRCNVTLDADVQQLMAQTVATYGRLDYAFNNAGIEIEKGK LADGSLDEFDAIMGVNVKGVWLCMKYQLPLLLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIEYAKKKIRVNAVCPAVIDTDMFRRAYE ADPRKAEFAAAMHPVGRIGKVEEIASAVLYLCSDGAAFTTGQALAVDGGATAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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