Pseudomonas sp. WCS374, PD374_RS21675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS374. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCCGCCGACCAGCCACGCGCCGAATTGCTGCTGGGCAAGCTCTACTACGAAGGTAAGTGGGTGCCCGCCGATGCCAAGGCCGCCGAGGCGCATTTCG AAAAAGCCGTGGGCCGTGAAGTGGCCGCCGATTACTACCTCGGCCAGATCTACCGCCGTGGCTACCTGGGCAAGGTTTACCCGCAAAAAGCCCTGGACCA CCTGCTGACCGCAGCGCGCAACGGCCAGAACAGCGCCGACTTCGCCATTGCCCAACTGTTTTCCCAAGGCAAGGGCACCAAGCCCGACCCATTGAACGCC TATGTCTTCAGCCAGTTGGCCAAGGCCCAGGACACGCCAGAAGCCAATGACCTGGCCACCCAGCTCGAAGCGCCGCTGACGCCTGCGCAACGCGCCGAAG GCCAACGCCTGGTGCAACAGGAACTGGCCGCCCGCGGCACCCTGGCCCAAAGCACGCTGCAACTGCACGCCCTGCAAGAAGAAGACGGCGAGGAATCCCT
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| DNA Sequence for Gene |
>PD374_RS21675
ATGAAGCTCAACCCATTCGTCAAGGCCGGTATCGGCCTGTCCTTCGCCCTGCTGTGGTCGTGCCCGACCCTGGCCGCGCTCACCGAAGCGAAGAACTTCG GCCTGGAAGTCAAAGCCACCGCGCAGTCTGAAGACGACCGCGACCTGGGCACCCAGAAAGGCGGCGACGTCAACGGCATCGGCCTCGACCTGCGCCCCTG GATCTACGGCGAAAGCGGCGCGTGGAGCGCCTACGCCATGGGCCAGGCAGTGGTGTCCAGCGACATCATCGAGACCGACACCCTGCAACAGTCGGCCGAT GACACCACCGAGCAGCAGTCGAGCAACGACGACCGCAAGGCCAAGAAAAACTACCTGGCCCTGCGTGAGTTCTGGGTCGGCTACAGCGGCTTCACGCCCT ACCCCGGCGAGATCCTCAAGTTCGGCCGCCAGCGCCTGCGCAATGACGACGGCCAGTGGCGCGACACCAACATCGAAGCGTTGAACTGGACCTTCGACAC CACCTTGCTCAAGGCCAATGTCGGCGCCGCCGAACGCTTCAGCGAATACCGCACCGACCTTAAGGAATTGTCGCCGGTCGACAAGGACCGCCAGCACTTC TACGCCGACGCCGCCTACCAGTGGACACCGGGCCAGTGGATCGGCCTGCGCGGCCACCACACCCACGACGACGGCAAGCTCGACTACGCCGAACCGGGTG TGGCCAGCGACCCGCTGGACAAGCGCGAAAACGGCGACCTGACCTGGCTGGGCATCGAAGCCAATAGCGACGCCTACAACTGGCGCAACACCAACACCGT CAACTACTGGGCGAGCATCACCGGCATGAAAGGCGACCGCGACAAGGTCAACGCCTTGAACGCCGACGGCAGCCGCCCCACCTCCGCCAAACGCAGCGAT GACGCCAGCGGCTGGGCCACCGATATCGGCGTGCGCCTGCGCCTGGATCCGCAGTGGCAAGTGGGTGCCGCGTACTCGCGCGCCAGTGCCGAATACGAAC AGAACGGCCTGCAAAGCAACCGTTCGAACTGGACCGGCACCCAGTCCCGTGTGCATCGCTTCGGCGAAGCGTTTCGCGGCGAAATGAACAACATGCAGTC CATGAGCCTGTTCGGTTCCTGGCAACTGCGCGAGGACTACGACGCCAGCCTGGTGTACCACAAGTTCTGGCGCGTGGACGGCAACAAGCCGGTGGGCAGC AACGGCATCGACGCGGTGCAGAACAACACCGATGACGTCACCGGCGCGATCCTCTCCAGCACCTCCCTGCCGTTGGAAGACGGCAAGAAAGACCTCGGCC AAGAAATGGACCTGGTGGTCACCAAGTACTTCAAGAAAGGCTTGCTGCCAGCGGCGCTGAGCCAGTCGATCGACGAGCCTTCAGCCCTGGTGCGTTTGCG TGCCGGCGTGTTCAAGCCCGGCGATGCCTATGGCAGCCAGGTCGACTCCTACATGCACCGCGCGTTTGTCGACGTGGTCTGGAAATTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGGAGCCTGCGCCATGAATGCTCAAAGCCTACTCGTCGCGGCAATGCTGATGGCCAGCGCCACAGCGTTTGCCGATACGGCGGCCAAGGCGCCGATCAT CGCCAAGGAACTGCAACAGGCCAAAACTTACACCATCTCCAGCCCGCCTACCGCGCCGCTGGAAATGGCCAAGCCGGCGCTGCCCGACCTGTCGGGCTAC ACCGCGCAGGCGATGGAAAAGAAAATCGTCAAGACCAAGGCGGGCAAAATCAGCATCCGCCGCATGATGCAGGAAGACGCGCTCAAGGACTTTATCGGCG GCGATAACAAGATGGCCGAATGGGTGGTGCGCCAGCATGGCATTCCCCAGGCGATCTTCGTCGATGACGGCTACATGAACCTCAAGGACCTGCTGGGCAA GGTGCCCAAGCAGTACTTCAGCGAAACGTCGCCGGGTGTCTTTTTGGCCAAGCTGCCGATCGTGGTCGGTCGCAAGGGCATCCTCGATATCGACAAAAAT
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| Amino Acid Sequence |
>alginate regulatory protein
MKLNPFVKAGIGLSFALLWSCPTLAALTEAKNFGLEVKATAQSEDDRDLGTQKGGDVNGIGLDLRPWIYGESGAWSAYAMGQAVVSSDIIETDTLQQSAD DTTEQQSSNDDRKAKKNYLALREFWVGYSGFTPYPGEILKFGRQRLRNDDGQWRDTNIEALNWTFDTTLLKANVGAAERFSEYRTDLKELSPVDKDRQHF YADAAYQWTPGQWIGLRGHHTHDDGKLDYAEPGVASDPLDKRENGDLTWLGIEANSDAYNWRNTNTVNYWASITGMKGDRDKVNALNADGSRPTSAKRSD DASGWATDIGVRLRLDPQWQVGAAYSRASAEYEQNGLQSNRSNWTGTQSRVHRFGEAFRGEMNNMQSMSLFGSWQLREDYDASLVYHKFWRVDGNKPVGS NGIDAVQNNTDDVTGAILSSTSLPLEDGKKDLGQEMDLVVTKYFKKGLLPAALSQSIDEPSALVRLRAGVFKPGDAYGSQVDSYMHRAFVDVVWKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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