Pseudomonas sp. WCS374, PD374_RS25070
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. WCS374. [Details] | |
| DNA Sequence Upstream of Gene |
TCCAGGGCCACGGCAAACCCATCCTGCAATTCGGCAAGCTCAACGTCCGGTTGATCAAGCTGGAACCGGCCGGCCAGTACGCACTGAAATTGACCTTCGA CGACGGTCATGACAGCGGACTGTTCACCTGGGACTACCTCTATCAGTTGGCCGTACGTCAGGACGCTTTGTGGGCCGACTACCTGGCCGAGCTCAAAGCC GCTGGTAAAACCCGCGATCCGAGTGAGTCGGTCGTGCGGCTGATGCTCTAGCTCAACGGTCTTGCTGTTTAGAGCGCATTTTCTAATTTCATCTGCTTGA ATGCCCTGTCGCGTGGCCAACGATTGGCCCGCTTGCGAAAAAAAATAAACTCGGGTAACCAATGGAGCTGGCAAGTTCCCTGCATTTGACGATGCGGTAT CAACGGTCACCCGAGTCGCAGTACCAGGCTGGTGTCGTGTATCGAAATTGGGTGCGCAGCAATCGCCGGTACTCGTCTTTCGGACAATGGAGCGTCGTAG
|
|
| DNA Sequence for Gene |
>PD374_RS25070
ATGAGTAACAAGAATAACGATGACTTGAAACGCCAGGCCTCGGAAAACACCCTGGGGTTGAACCCGATCATCGCGTTACGCAAAAAGGATTTATTGGCCT CGGCCAAGATGGTGCTGACCCAAGCCATCAAGCAACCGTTGCACAGCGTCAAGCACGTCGCCCACTTTGGCGTTGAATTGAAGAATGTGATGTTCGGCAA ATCCGCACTGGTGCCCGAGGGCGACGACCGTCGCTTCAACGACCCAGCCTGGAGCCAGAACCCGCTCTACAAACGTTATTTGCAGACTTACCTGGCATGG CGCAAGGAACTTCACGACTGGATCGACGACAGCAACCTGTCGGCACAAGACATCAGCCGGGGCCACTTCGTGATCAACCTGATGACCGAAGCCATGGCCC CCACCAACAGCGCGGCCAACCCGGCGGCGGTCAAACGCTTCTTTGAAACCGGCGGTAAAAGCCTGCTCGACGGTTTGTCTCACCTGGCCAAGGACATGGT GCACAACGGCGGCATGCCCAGCCAGGTCAACATGGGCGCCTTTGAAGTCGGCAAGACCCTGGGCACCAGCGAAGGCGCGGTGGTGTTTCGCAACGACGTG CTGGAGCTGATCCAGTACAAGCCCATTACCGAGCAGGTGCATGAGCGCCCGCTGCTGGTGGTGCCGCCGCAGATCAACAAATTCTACGTCTTCGACCTGT GCCCGGATAAAAGCCTGGCGCGCTTCTGCCTGCGTAATGGCCAGCAGACCTTTATCGTCAGTTGGCGCAACCCCACCAAGGCCCAGCGCGAATGGGGGCT ATCCACCTATATCGAGGCGCTGAAGGAAGCGGTCGATGTGGTCACGGCGATTACCGGCAGCAAAGACGTGAATATGCTCGGTGCCTGCTCAGGCGGCATC ACCTGCACGGCGCTGCTGGGCCACTACGCGGCGCTGGGGCAGAAGAAGGTCAACGCCCTGACTCTGCTGGTGAGCGTGCTGGATACCACCCTGGACACCC AGGTGGCGCTGTTTGTCGACGAGCAGACTCTGGAAGCGGCCAAGCGCCACTCCTATCAGGCCGGCGTGCTGGAAGGTCGCGACATGGCCAAGGTCTTTGC CTGGATGCGCCCCAACGACTTGATCTGGAACTATTGGGTCAACAACTACCTGCTGGGCAACGAGCCGCCAGTGTTCGACATCCTGTTCTGGAACAACGAC ACCACACGCTTGCCGGCCGCGTTCCATGGCGACCTGATCGAACTGTTCAAAAACAACCCACTGGTACGGGCCAACGCCCTGGAAGTGTGCGGCACGCCCA TCGACCTCAAGCAGGTCACTGCCGATATCTATTCCCTGGCCGGCACCAACGACCACATCACGCCGTGGCAGTCCTGCTACAAGTCAGCGCAGTTGTTCGG CGGCAAGGTCGAGTTTGTACTGTCCAGCAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAAGCGCGCTACCAGACCAGCGAGGGTCTG GCCGGCAGTGCGCTGGAGTGGCAAGAAGATGCGACCAAGCACACCGATTCGTGGTGGCTGCATTGGCAGGTGTGGCAGGCGGAGCGGGCGGGAAAATTGA AAAAAGCCCCGACGACATTAGGCAATAAAACCTATGCAGCCGCTGAAGCGGCGCCGGGTACCTATGTACATGAACGCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCATTCTTGTGATTGAAATGAGATCAGATGTGGGAGCTGGCTTGCCTGCGATAGCAATGGGCCTGCTCACTAATCGCGGCCTGAAAGAATGCCATCGCAG GCAAGCCAGCTCCCACACTGACCGAGTTCCTACAGACCAATAGCACCACTTCACAGGGCTTGAGCATGGCGCAACCGTTCATCTTCCGTACCATCGACCT GGATGGCCAGACCATCCGCACGGCGGTACGCCCGGGCAAGCCGCACTTGACCCCGCTGCTAATCTTCAACGGCATCGGCGCCAACCTTGAGCTGGTGTTT CCGTTCGTCCAGGCCCTGGACCCGGACCTGGAAGTGATCGCCTTCGACGTGCCCGGCGTGGGCGGTTCCTCGACGCCGAACCGGCCCTACCGCTTTCCCG GCCTGGCCAAGCTCACCGCCCGCATGCTCGATTACCTCGACTACGGCCAAGTGAACGCCGTGGGTGTGTCCTGGGGCGGAGCGCTGGCCCAGCAATTTGC
|
|
| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDDLKRQASENTLGLNPIIALRKKDLLASAKMVLTQAIKQPLHSVKHVAHFGVELKNVMFGKSALVPEGDDRRFNDPAWSQNPLYKRYLQTYLAW RKELHDWIDDSNLSAQDISRGHFVINLMTEAMAPTNSAANPAAVKRFFETGGKSLLDGLSHLAKDMVHNGGMPSQVNMGAFEVGKTLGTSEGAVVFRNDV LELIQYKPITEQVHERPLLVVPPQINKFYVFDLCPDKSLARFCLRNGQQTFIVSWRNPTKAQREWGLSTYIEALKEAVDVVTAITGSKDVNMLGACSGGI TCTALLGHYAALGQKKVNALTLLVSVLDTTLDTQVALFVDEQTLEAAKRHSYQAGVLEGRDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIELFKNNPLVRANALEVCGTPIDLKQVTADIYSLAGTNDHITPWQSCYKSAQLFGGKVEFVLSSSGHIQSILNPPGNPKARYQTSEGL AGSALEWQEDATKHTDSWWLHWQVWQAERAGKLKKAPTTLGNKTYAAAEAAPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|