Pseudomonas chlororaphis EA105, NZ35_RS13110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGAGCCCTGGCGTGCAGGTCGACCGCATCGGCCAGTTGTCGCCAGGAATAACGCAACTGCTGATGGCAGACCACCAGCGCTTCGCCGTCGGGATACTGTG CGACGGTCTGGTCGAACTTCTGCCCGATGGTCATCGCCAGCAAGGCTTTGTCCTGAGAGCCACGGGTGTAGCTGCGCGGCGGGTTTGCACTGGGTTGATC CATGACGACCCCTATTGTCTTTATTAGTGGGTTTTGCCGGATTCATTCCCTGTGGGAGCGAGCTTGCTCGCGAAGAGGCCAGCAGATTCAACATCCGTGT TGACTGAACTGACGCTTTCGCGAGCAAGCTCGCTCCCACAAGGTCCGCTCCGTTTCAATCTTGAACTACCCCTACTCTCGCTCAAGTTGACGTTAACGTA AAGGGTGATTGACAGCCATCCATCACAGGCTTACGTTAACGTAAAGGTGAGAGCAGAGTGACCGCCCTCCCCACCCTACAAAAAAGCCAAAAGGTGACCC
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| DNA Sequence for Gene |
>NZ35_RS13110
ATGAGCTATCCATCCCTGAACTTCGCCCTCGGTGAAACCATCGACATGCTGCGCGATCAGGTTCAGTCTTTTGTCGCCAAGGAGATCGCCCCGCGCGCGG CGCAGATCGACAGCGACAACCTGTTCCCCGCCGACATGTGGCGCAAGTTCGGTGACATGGGCCTGCTCGGCATCACCGTGCCGGAAGAGTACGGCGGCGC GGGCCTGGGTTACCTGGCGCATGTGGTGGCGATGGAAGAAATCAGCCGCGGCTCGGCCTCGGTGGCGTTGTCCTACGGCGCGCATTCCAACCTCTGCGTC AACCAGATCAACCGCAACGGCAACCACGAACAGAAATCCAAGTACCTGCCGAAGCTGATCAGCGGCGAGCACGTCGGCGCATTGGCGATGAGTGAACCGA ACGCTGGTTCCGACGTGGTCTCGATGAAACTGCGCGCCGACAAACGCGGCGACCGTTTCGTCCTCAACGGCAGCAAAACCTGGATCACCAACGGCCCTGA CGCCAACACCTACGTGATCTACGCCAAGACCGACCTGGAAAAAGGTCCGCACGGCATTACTGCGTTTATCGTCGAACGTGACTGGAAAGGCTTCAGCCGC AGCAACAAGTTCGACAAGCTCGGCATGCGCGGTTCCAACACCTGCGAGCTGTTCTTCGATGACGTCGAAGTACCGGAAGAAAACATCCTCGGCGTGCTCA ATGGCGGCGTCAAAGTGTTGATGAGCGGCCTCGATTACGAGCGCGTTGTGCTGTCCGGCGGCCCGACCGGGATCATGCAGTCGTGCATGGACCTGATCGT GCCGTACATCCACGACCGCAAGCAGTTCGGCCAAAGCATCGGTGAATTCCAGCTGATTCAGGGCAAAGTCGCCGATATGTACACTCAACTCAATGCCAGT CGCGCCTATCTCTATGCGGTTGCCCAGGCTTGCGAACGTGGCGAAACCACGCGCAAGGATGCCGCCGGGGTAATCCTCTACACCGCTGAGCGCGCCACGC AAATGGCCCTCGATGCGATCCAGATTCTCGGCGGTAACGGTTACATCAACGAATTCCCGGCGGGTCGTCTGTTGCGTGACGCCAAGTTGTACGAAATCGG CGCCGGCACCAGTGAGATCCGTCGCATGCTGATCGGTCGCGAACTGTTCAACGAAACCCGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGAGCTGACCATGGCTACCCTGCACACTCAGCTCAATCCCCGCTCAGCGGAGTTCGCCGCCAACAGCGCGGCGATGCTCAAACAGGTCGACGCCCTGC ACACCTTGCTCGCCCAAGTGGCGCAGGGTGGCGGCGCGAAAGCCCAGGAACGCCACACCTCGCGCGGCAAACTGCTGCCGCGCGAGCGCATCAACCGCTT GCTCGATCCGGGCTCGCCGTTTCTGGAAATCAGCCAATTGGCCGCCCACGCGGTCTATGGCGAAGATGTCCCGGCTGCGGGTGTGATCGCCGGTATCGGC CGGGTCGAAGGCGTCGAATGCATGATCGTCGCCAACGACGCAACGGTGAAGGGTGGCTCGTACTACCCGCTGACCGTGAAGAAACACCTGCGCGCACAAA CCATCGCTCAGCAGAATCGCCTGCCGTGCATCTATCTGGTGGATTCCGGCGGCGCCAACCTGCCGCGTCAGGACGAAGTGTTCCCGGATCGCGAGCATTT
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQVQSFVAKEIAPRAAQIDSDNLFPADMWRKFGDMGLLGITVPEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGNHEQKSKYLPKLISGEHVGALAMSEPNAGSDVVSMKLRADKRGDRFVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDDVEVPEENILGVLNGGVKVLMSGLDYERVVLSGGPTGIMQSCMDLIVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYTAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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