Pseudomonas chlororaphis EA105, NZ35_RS11475

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain EA105 contig_6, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AAGTCAATGAAGAGGGGCGCACCACGGACTTTTTGCTGGTGCCGTATTTCGGCGCCTGCATCCATGTGCCGCCACCGCCGTCGAACCAGATTGTGCATGT GAAAAGCGAGCTGGGCGTGAAGCTTGATGAGCTGTATCAGCCGTACTGGGTCGAGGGGCCGTTGCAGGTCAAGGCGTCGAGCAGCGAACTGGCGGATGCC GGCTATCAGATGGATGCAGACAAGATTTATGTGTATGAGCTGCCGGAGTAATTCCCGGTAGTTTTGTGCTGTCTGTAAAAGCCCCATCGCTGGCAAGCTA GCTCCCACAGTGATTGAGTCGTTCACAAATTTTGTGATCACCAACAAAACCTGTGGGAGCTGGCTTGCCAGCGATGGGGCCCGCAAAGGTTCCGCAAAAG TCTGCCCCTTCACTGTTTCATTGAGCTGAGTCAAAAGACCGTATCAGTTGGCTTCGTACCATAGGACATCAAACATTTTTAACGTCCTTTCGGAGCCCCC
DNA Sequence for Gene
>NZ35_RS11475
ATGAACAAGTCCTTGCTCAGCGCTTCGCTGTTTGCCCTCGCGCTCGCAGCCCCGCTCGCCCATGCCCACGAAGCCGGTGACATCCTCATCCGCGCCGGTG CGATCACCGTCAACCCGAAAGCCGACAGTTCCAGCGTCAAGGTCGATCAGGGTCCGTTGAGCGGCACCAATCTGGGCGGCAAGGCGACCATGAGCAGCGA TACCCAACTGGGTCTCAACTTCGCCTACATGCTCACCGATCACGTCGGCCTCGAATTGCTCGCGGCCACGCCGTTCGAGCATGACGTCAAGCTCAAGGGC ACTGCCCTGCCTGCGGCCAACGGCAAGCTCGGCACCCTGAAACACCTGCCGCCGACCCTCAGCGTTGTGTACTACCCGCTGGACTCGAAGTCGCCGTTCC AGCCTTACGTCGGCGGTGGCATCAACTACACCTGGATCTACGACGAGCACGTTGGCAGCGAGGCCAGCGCCAACGGTTTCAGCAACTTCAAGGCGAAAAA CTCCTGGGGTCTGGCCTGGCAGGTCGGTGCTGACTACATGCTGACCGACAACATCATGCTCAACGCCCAAGTGCGTTACATCGACATCGACACCCGCGCC ACCGTCGAGAACAACGCGGTTGCGCCGGGCACTCGCGCACGGGTGAACGTGGATGTGGATCCGTTCATCTACATGGTCGGTTTGGGCTATAAGTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCGAGTTACCGAACGTTCACGTGGTGGTGAATGAGGCTTGGTGGTGAGCAGGCATAGAACTGACGGCGACCGTACGCAGTTGATCGGGGGATAACATTC CCTTGCCACAGGAGTAGCGACATATATTCCGGCCGTGAAAAAGGCGCCTGTCAAAGGGCGCCTTTTTCATGTCTGCCTGGAATGCGTGGTGAGGTTGAGA TCTATCCCCCTCACCCCAGCCCTCTCCCCCAAGGGGCGAGGGGGAAAGGGAGCCGATTTGTGTGTTCTTCAAAATCTCAGTTCGACTCGGTATTTCACGT CGGCGTAATTCGAAAGTACACCTCGATCAGTCCCCTCTCCCTCAGGGAGAGGGTTAGGGTGAGGGGCTCTTTTCAGGAACGACCGAGCAACCGCGCCAAA CCCACGCTCATCGGCGTCTGCTCAGGCAACTTGAACCGCTCCAGCAAGCGCGCATTGTTCGCCCGCGAATGCCGGATATCACCAGAACGCGCCGGGCCAT
Amino Acid Sequence
>outer membrane protein W
MNKSLLSASLFALALAAPLAHAHEAGDILIRAGAITVNPKADSSSVKVDQGPLSGTNLGGKATMSSDTQLGLNFAYMLTDHVGLELLAATPFEHDVKLKG TALPAANGKLGTLKHLPPTLSVVYYPLDSKSPFQPYVGGGINYTWIYDEHVGSEASANGFSNFKAKNSWGLAWQVGADYMLTDNIMLNAQVRYIDIDTRA TVENNAVAPGTRARVNVDVDPFIYMVGLGYKF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site