Pseudomonas chlororaphis EA105, NZ35_RS28290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_55, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGAAGCGATTTCGGTGGGCGTGGTCGATGTCGAGACCCAGACCAAGGCACTGTCGTTGCGTGTCTTGACGGTCGATGACTCGTCGGTGGCGCGCAAGCAG GTCACGCGTTGCCTGCAGACGATCGGTGTCGAAGTGGTGGCGCTGAACGACGGCAAGCAGGCGCTGGATTACCTGCGCAAGCTGGTCGATGAGGGCAAGA AGCCGGAAGAAGAGTTCCTGATGATGATTTCCGACATCGAGATGCCGGAGATGGACGGGTACACCCTGACGGCGGAAATCCGCGGCGACGCACGCATGCA AAAGCTTCATATCATCCTGCATACTTCGTTGTCCGGGGTATTCAATCAGGCGATGGTCAAGAAAGTCGGTGCAGATGACTTCCTGGCCAAGTTCCGCCCT GATGACCTGGCATCCCGGGTAGTCGACCGGATCAAAGCAGCAGATATCAGCTAGGAGCGTTTTGCTCCTGGCGGTCAACACGATTTAAGAGGCGGCATCA
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| DNA Sequence for Gene |
>NZ35_RS28290
TTGTCTACGGGTAATTTGGATTTCGAACAGTTCCGGGTCTTCCTGGAAAAAGCCTGTGGCATTTTGCTCGGTGAAAACAAGCAGTACCTGGTCTCGAGCC GTCTCAACAAACTGATGGAGCAGCAAGGCATCAAATCCCTGGGTGAGCTGGTTCAGCGCATCCAGACCCAGCCGCGCAGCGGTTTGCGCGAGCAGGTGGT CGATGCCATGACGACCAACGAAACCCTGTGGTTTCGTGACACCTATCCGTTTGAAGTCTTGAAGAACAAGGTGCTGCCTGAAGCGATCAAGGCCAGCCCC AACCAGCGTCTGCGGATCTGGTCGGCAGCCTGCTCGTCGGGTCAGGAACCGTACTCGCTGTCGATGTCGATCGACGAGTTCGAGCGCAGCAACCTTGGCC AGCTGAAAATGGGCGTGCAGATCGTTGCCACTGATCTGTCCGGCCTTATGCTGACCAACTGCAAGACCGGCGAGTACGACAGCCTGGCGATCGGTCGCGG TTTGTCGCCGGAACGTCTGCAGCGTTACTTCGACCCGAAAGGGCCGGGGCGCTGGGTGATCAAGGCGCCGATCAAGAACCGCGTGGAGTTCCGCTCGTTC AACCTGCTCGACAGTTATGCGGCGCTGGGCAAGTTCGACATCGTGTTCTGCCGCAACGTGTTGATCTACTTCTCTGCCGAAGTGAAGAAAGACATCCTGT TGCGCATTCACAGCACGTTGAAGCCGGGCGGTTATCTGTTCCTTGGCGCTTCCGAGGCGCTGAACGGTTTGCCGGACCATTACCAGATGGTTCAGTGCAG CCCGGGGATCATTTACCAGGCGAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCAGCGGCAATACAAAAAACGGGAAGCCTTAAAGCCTCCCGTTTTTTTATGCCCCAATTATTTCCCACGAACACCACACCCCCGATGTGGGAGCGAGC CTGCTCGCGAAAGCGGTCTGTCAGTAAAACAGTTGGCGACTGACACGCCGCCTTCGCGAGCAGGCTCGCTCCCACAGGGATCTGCGTTGACCTGGCAAGG ACGGCAAGCGGCAGAAAAGCGGCATTCGGCGGAAACCGGTTGCCGCTTTTCTGGCATTGCCGCTTTGCCGACTCCCGGCAAAGCCCCGGTTTATGCGGGT TTTGTGGTTTGGCACGGCGCTTGCTAAAGCTCAGTTACGAAAAACCGGTCACCTGAAGGTTCCCGACATGAGCATCAGCTTCGATAAAGCGCTCGGCATT CACGAAAAGGCATTGGGCTTCCGCGCCCAGCGTGCCGAAGTGCTGGCCAACAACATCGCCAACGCCGATACCCCGAACTACAAGGCGCGGGATCTGGACT
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| Amino Acid Sequence |
>chemotaxis protein CheR
MSTGNLDFEQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQGIKSLGELVQRIQTQPRSGLREQVVDAMTTNETLWFRDTYPFEVLKNKVLPEAIKASP NQRLRIWSAACSSGQEPYSLSMSIDEFERSNLGQLKMGVQIVATDLSGLMLTNCKTGEYDSLAIGRGLSPERLQRYFDPKGPGRWVIKAPIKNRVEFRSF NLLDSYAALGKFDIVFCRNVLIYFSAEVKKDILLRIHSTLKPGGYLFLGASEALNGLPDHYQMVQCSPGIIYQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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