Pseudomonas chlororaphis EA105, NZ35_RS27725

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01024
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0031640 killing of cells of other organism
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01024
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0050829 defense response to Gram-negative bacterium
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01024
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0140911 pore-forming activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01024
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00280 Channel forming colicin signature IPR000293 Channel forming colicin, C-terminal cytotoxic 334 352 1.2E-9
SUPERFAMILY SSF56837 Colicin - - 148 389 9.94E-46
PRINTS PR00280 Channel forming colicin signature IPR000293 Channel forming colicin, C-terminal cytotoxic 320 333 1.2E-9
PRINTS PR00280 Channel forming colicin signature IPR000293 Channel forming colicin, C-terminal cytotoxic 243 258 1.2E-9
Coils Coil Coil - - 181 203 -
Pfam PF01024 Colicin pore forming domain IPR000293 Channel forming colicin, C-terminal cytotoxic 201 385 1.1E-28
Coils Coil Coil - - 153 178 -
Gene3D G3DSA:1.10.490.30 Colicin IPR038283 Channel forming colicin, C-terminal domain superfamily 195 388 3.5E-59
PRINTS PR00280 Channel forming colicin signature IPR000293 Channel forming colicin, C-terminal cytotoxic 262 278 1.2E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.