Pseudomonas chlororaphis EA105, NZ35_RS24825
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_33, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACATCTTCGACCTGATCGAACAGACCGAACCAGGCAAGGGCGGCGAAATCCAGATCACCGACGCCCTGATGAAACAAGCCCAGAACGGCTGCGTGATGGC CTACAAGTTCAAAGGCAAGCGTTTCGATTGCGGTGGTGCTGAAGGCTACATCGAAGCGACCAACTTCTGCTTCGAGAACTTCTACAAGACTGGCAAGGCT TACTAAGAGCGCTTGATTGGTCAGTAGTGACTTTGCACTGCGTCATTCGTGTAAAGGTCAAAAAAACGCCCCGACTGGTTCGGGGCGTTTTTTTTGCGCT GAAAAAAGTTCGATTCCAAGCGAAAAGGGTCGAAAGTCGAAGGAAATTTCCCAGTTGTAATATGAAACAAATGAGTAATTGTCAGCGCGTTTGATCGCTG TTGAACTCGTCAATCCTCGCCACGGATGTGCGCAGGTAAAACTTTCGCGGCTGTCTGAACACGTCAGCGGAATCAAGATTGCAGCATAAGGAATTTGCCG
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| DNA Sequence for Gene |
>NZ35_RS24825
GTGCCGCTTACTCATCAGGTTACACATCCCAGAGTAAAATCTACGCGCTGGTTCGGCCTCGGCGTGTTGATGTTGCCAGTGCTACTGGTAACCGTTGATA ACACCGTACTGGGTTTCGCATTACCCAAAATCGCCGAAGCTTTGCGCCCAAGTGCCAGTCAACAACTGTGGATGATCGACGCCTACTCGTTGGTGCTCGC CGGACTGCTGGTGTCCATGGGAAGTCTGGGAGATCGGGTCGGGCACCGCAAGTTGCTGCTTATCGGCTCGCTCGGATTTGCTGTGGTATCGGTGCTGACC GCCTATTCCGAGACGGCCTTGCAGTTGATTATCGGGCGTGCCTGCATGGGGATTTTCGGGGCGATGCTGATGCCTTCCACATTGGCATTGATACGTTCGG TGTTTGAGGATCGAGAGGAGCGCAGGCTGGCTGTCGCGATCTGGGCCACGACATTGACCGTCGGTTCGGCTCTGGGGCCTTTGGTGGGCGGAGTGTTGCT GCAGTTCTTTGATTGGGGCGCGATTTTTCTGTTGGCGGTACCCGTTCTGATTCCGCTGTTGGTGTTGGGTCCGCTATTGCTTCCTGAGTCGGAGCGTGAA GCATCTGGGCCGTTGGATCCGATCAGCATTCTTCAGTCGATGGCCGCCTTGGGTGGCATCGTTTACGGCATCAAGCATGCCGCCAGTGAAGGTGTTGACG GGGTCGTACTGGGGGCCTTTCTGGTCGGCGTATTGGCAGGCTGGATGTTTGTCCGGCGCCAGTTACGTCTTCCTGTGCCGCTGATGGATATGACTCTGTT CCGCAACGGGACTTTTAGCGGGTCTGTTCTGATCAATTTGATGAGTCTTGCGTTCCTCGTTGGTTTTGTTTTCTTCACCACTCAGTTTTTGCAGATTGTC CTGCAGATGTCGCCTTTGAGTGCGAGCCTAGCGTTGGTGCCGGGCCAAATCATGGCGATTGTGGTGGGAATGGCGGTCGTCCCGGTCGCTCAGCGTATGC CTGTGCATGTGCTGATACCGATTCTGGTGGCCTTCGCCGCTGTGGCGTTTTTACTCGTGGCCAGCGTGGGCAGTAGTCTTGCGGTATTGGTTGCGGCGTT CGCGTTGCTGAATATCGGAGTAGGCGCGATCGCTACGGTTTCCAATGACGTGATTTTGTCGGCGGCGCCCCCAGCTAAGGCCGGTGCAGCTTCCGCTATC AGTGAAACAGCCTATGAGGTAGGCGTCGTTTTGGGGACGACCCTGCTTGGTGGCCTGGTTACGGCTCACTATCGCGCAGACTTGCAGCTTCCAGCGTTTT TGAGCGATGCCCAGACGATGCTGGCAAGTGAAACGCTGGCTGGCGCTCATCATGTGGCGACGGGGTTGGCGGGGGATCAAGCGCAACAGTTAATGCAGCA GGCGGGAAGTGCATTTGAAGGCGGAATTGCATTGGTATCGTGGGTCGCTTTCGGTTTGGCATTGATAGCAGTTTTGATCGCCTGGCGTACGCTGCGGTTA CCAAAGGCTCAGTCCGCAGAATGTCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAAAGCTTGCTGCTCGAACCCTTGGCATTGGTCATCGACATAACGGCAGAGGCTTGCTCAATGAGCATCTGCAGGTATGCTGATCCCCTGCCGAGGAG ATAGAAATGGCCTACGATTTTGACCTTTATGTGATTGGTGCCGGTTCCGGCGGTGTGCGTGCTGCGCGTTTTGCGGCCGGGTTCGGCGCGAAAGTGGCGG TGGCCGAGAGCCGTTATCTGGGCGGGACCTGTGTCAACGTTGGCTGCGTGCCGAAAAAACTGCTGGTGTACGGCGCGCATTTCGCCGAAGACTTTGAGCA GGCGTCCGGTTTTGGCTGGAGCCTGGGCGAAGCGAATTTCGATTGGGCGACGCTGATCGCCAACAAGGATCGCGAGATCAATCGCCTCAACGGCATCTAT CGCAATCTGCTGGTTAACAGCGGCGTGACCCTTCATGAGGCGCACGCGAAGATCGTTGGTCCGCATGAGGTTGAAGTGAATGGTGAGCGCTACACCGCGA
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| Amino Acid Sequence |
>MFS transporter
MPLTHQVTHPRVKSTRWFGLGVLMLPVLLVTVDNTVLGFALPKIAEALRPSASQQLWMIDAYSLVLAGLLVSMGSLGDRVGHRKLLLIGSLGFAVVSVLT AYSETALQLIIGRACMGIFGAMLMPSTLALIRSVFEDREERRLAVAIWATTLTVGSALGPLVGGVLLQFFDWGAIFLLAVPVLIPLLVLGPLLLPESERE ASGPLDPISILQSMAALGGIVYGIKHAASEGVDGVVLGAFLVGVLAGWMFVRRQLRLPVPLMDMTLFRNGTFSGSVLINLMSLAFLVGFVFFTTQFLQIV LQMSPLSASLALVPGQIMAIVVGMAVVPVAQRMPVHVLIPILVAFAAVAFLLVASVGSSLAVLVAAFALLNIGVGAIATVSNDVILSAAPPAKAGAASAI SETAYEVGVVLGTTLLGGLVTAHYRADLQLPAFLSDAQTMLASETLAGAHHVATGLAGDQAQQLMQQAGSAFEGGIALVSWVAFGLALIAVLIAWRTLRL PKAQSAECH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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