Pseudomonas chlororaphis EA105, NZ35_RS23300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATGCTGCTGTGGCCAAGGAAGAAACTTTCGGTCCGCTGGCGCCGCTGTTCCGCTTCAAAGATGAAGCCGAAGTGATCGCGATGTCCAACGACACCGAGT TCGGTCTGGCTTCGTACTTCTACGCTCGTGATCTGGGCCGAGTGTTCCGTGTCGCGGAAGCGCTGGAATACGGCATGGTCGGCGTCAACACCGGGCTGAT CTCCAACGAAGTCGCGCCGTTCGGCGGCATCAAGGCCTCGGGCCTGGGCCGTGAAGGCTCCAAGTACGGCATCGAAGATTACCTGGAAATCAAATACCTC TGCCTGGGCATCTAAGCTCGGACAAGGATCGCTGCAAACGCAAAGGGCACGAGAGCGCTGTCCCTTTGCGTGGTTTCAAACCGGAATTTTCTCTGCGGCC AGGAACGCCGTGGCAGTCGATCATCGCATGCTGCCACCGTCGATTTCTCCCGCTTAATCCTTGAACCACGCCGCCCGATGAGTGGCGAATGAGGACTGTA
|
|
| DNA Sequence for Gene |
>NZ35_RS23300
ATGAGCAAGACTAACGCTGAACTGATGGCCCGTCGTACCGCAGCTGTTCCACGTGGTGTTGGCCAGATTCACCCGATCTTCGCTGAGTCGGCCAAGAACG CTACCGTGACTGACGTTGAAGGTCGTGAGTTCATCGACTTCGCCGGCGGCATTGCTGTACTGAACACCGGCCACGTGCACCCGAAAATCATCGCCGCCGT GACCGAACAGCTGAACAAGCTGACTCACACTTGCTTCCAGGTGCTGGCTTACGAGCCGTACGTTGAGCTGTGCGAAAAAATCAACGCCAAGGTGCCAGGT GACTTCGCCAAGAAAACCCTGCTGGTCACCACCGGTTCCGAAGCCGTGGAAAACGCCGTGAAAATCGCCCGTGCTGCCACTGGTCGCGCCGGCGTGATCG CCTTCACCGGCGCCTACCACGGTCGCACCATGATGACTCTGGGCCTGACCGGTAAAGTCGTGCCGTACTCGGCCGGCATGGGCCTGATGCCAGGCGGCAT CTTCCGCGCGCTGTACCCGAACGAACTGCACGGCGTGAGCATCGACGATTCGATCGCTTCCATCGAGCGCATCTTCAAGAACGACGCCGAGCCGAAAGAC ATCGCCGCGATCATCATCGAGCCTGTACAGGGTGAAGGTGGTTTCTACGTTGCGCCGAAGGAATTCATGAAGCGTCTGCGTGCGTTGTGCGACCAGCACG GCATCCTGCTGATCGCTGACGAAGTACAGACCGGCGCCGGTCGTACCGGCACTTTCTTCGCCATGGAACAGATGGGCGTTGCTGCCGACCTGACCACCTT CGCCAAATCCATCGCTGGCGGCTTCCCGCTGGCCGGCGTGTGCGGCAAGGCCGAATACATGGACGCCATCGCTCCAGGCGGCTTGGGCGGCACTTACGCT GGTAGCCCGATCGCTTGCGCCGCTGCACTGGCGGTGATGGAAGTGTTCGAAGAAGAACAACTTCTGGACCGCTGCAAGGCTGTTGGCGAGCGTCTGGTCA CTGGCCTGAAAGCTATCCAGGCCAAGTACCCGGTGATCGGCGAAGTCCGAGCCCTGGGCGCGATGATCGCGGTCGAGCTGTTCGAAAACGGCGACAGCCA CAAGCCGAACGCTGCAGCAGTAGCGTCCGTTGTGGCCAAGGCGCGCGACAAGGGTCTGATCCTGCTGTCCTGCGGCACCTACGGCAACGTTCTGCGCGTC CTGGTACCGCTGACTTCGCCGGACGAGCAACTGGATAAAGGTCTGGCGATCATCGAAGAGTGCTTCTCGGAGCTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCGAGCACTGTGTGATCGGATAGACAAAAAAACCCGCTTCGGCGGGTTTTTTTCGTCCCGTGAACATATCAATTGCTTTTGCGCTGTATCGAAAGGCCA GCATTGGCTAAGGTTCAGGCATTGCAAGGGAGAGCGCGCATGACTGCCGTTGATTTACCCGCCGTACCCCGAGTGCTGATTGCCGAGGCCGATCCGTGGT CCCGGGACCTGCTCAAACAAGTGCTCCTGAACGTGCGTTGCGATGCGCGGATAGACTTGTGCGCCGACGGGCAGCAAGCCCTGTCATTGCTCAGTGAAGT GCCTTATGACCTGGCGATCGTCGATTGGGAGTTGCCCGGCATCGACGGTTTGAGCGTGCTGCGCAGTGTTCGTCAGCGCAAACGCAACCCACCGTTGCCG TTCATCCTGATGAGCAGCCGCAACGACAGCGCCAGTGTGCGTGAAGCGATTCCGTTAGCGCCCACGGCCTACCTGACCAAGCCGCTGAATATGGAAAGCC
|
|
| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSKTNAELMARRTAAVPRGVGQIHPIFAESAKNATVTDVEGREFIDFAGGIAVLNTGHVHPKIIAAVTEQLNKLTHTCFQVLAYEPYVELCEKINAKVPG DFAKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALYPNELHGVSIDDSIASIERIFKNDAEPKD IAAIIIEPVQGEGGFYVAPKEFMKRLRALCDQHGILLIADEVQTGAGRTGTFFAMEQMGVAADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVMEVFEEEQLLDRCKAVGERLVTGLKAIQAKYPVIGEVRALGAMIAVELFENGDSHKPNAAAVASVVAKARDKGLILLSCGTYGNVLRV LVPLTSPDEQLDKGLAIIEECFSEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|