Pseudomonas chlororaphis EA105, NZ35_RS21780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_24, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGTATCGCCATCGAAAGCCTGGACACCCCGGCTGACCCGGCGGACGCGGCTTCGGTTGAAGAAGAGCGCACTTGGCTGGTAAACGCGATCGATCGCGAC CAGCGCATGCTGCCGCAACTGGAACAAGCCCTTGAGCGCATCAAGGAAGACAGCTTTGGCTGGTGCGATGACAGCGGCGAGGCCATTGGCCTGAAGCGCC TGCTGATCAGCCCGACCACCAAGTACTGCATCGAAGCTCAAGAGCGTCACGAGCAGATCGACAAGCACCAGCGTCAGGCCTGATTTTTTCGGCGCTGTGA TCGCGGGCAAGTCCGCCCCACCAGGTTCAACACCGAACCAGTGGGAGCCGGGCTTGCCCGCGAAGCTTTTTATCGTCCGCAATATTTCCGCGCGATTTCA TTGACCTGCCACAGACCCCACGACTAACGGACCATGGATAATGGCGTTGTAGTGGCGTTTAATGCAGTCACAACAATGAGAACAAGCGTGGGGTGTTGAT
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| DNA Sequence for Gene |
>NZ35_RS21780
ATGACGAGAGATGGATCTCTGGTTGGGGCTTTGCCTGCACCAGTGCTTTTGCCGAAAAACCGCTGGATCGCGCCGACCCTGCAAAGCATCGCCCTGATGC TGTTGCTGGCCGGCATGTCCCTGGCCGGATGGTCGCTGTACATTGGCATGCCGCTGGCGGTGCTGATTGTCTGGCTGCCGCGCCTGCGCTCTCGCGCCAT CCCCGATACCCAGCCTGCCGACAGCGGCAGCGCAATGTCCGAACTGACCCGCGACCTTTCCTACACCACCAGCCATAACGCTTTGTCGGCGGCGGGCGTG GTGTTTTCGGTCAAGGAGCTGGCGAGCAAACTCGAATCGCAACTCGATGCGGCGGCGCAGATCGTCAGCAACGCCGAGGTGATGATCGCCACTGAACACG CCACTTCACAGCTCAGCCGTGAAGCGCTGGCCGCTGCCAGTGAGGCGCATCACAGCAGCGCGGCGGGGCGCACGGAACTGGTGGATTCGATCGCGCGCAT GCATCAGCTCAGTCAGCGTGCCAATGCCAGCCGTGAATTGATCGAAGCCTTGAGTGTGCGCAGCGATGATATTCAGCGCGTGACCCTGGTGATTCAGTCG ATCGCCAGCCAGACCAATCTGCTCGCATTGAACGCGGCGATCGAAGCGGCGCGGGCCGGTGAGCATGGTCGCGGTTTTGCCGTGGTGGCGGATGAGGTTC GTGGGTTGGCGGCGCGTACGGCCTCGGCGACCGGTGAAGTGGGTGAGATGGTCGCTGACATTCAGCAGCGCACGGCGCAGGTCGTGGAGCAGATTCGCGA GTTGTCGAGTGATCTGCAGATCGGTGTCGAGCAGGTCGAACACACCGGTCAGCATCTGGAGAACATCGCGCGACTGGCCGCCGGGGTGGAAACCCAGGTC GGTGAAATCGCTCAGGGCGCGGAAACCAATCGCGAGCAACTCGACAGCCTGTTCAAGGCGATCGAGCAGATGCGCAGCGATCTGGCGATCAGCGATCAAC AGACTCGCCGCCTCGCTGAAGCGGCGGTGCAAATGGAAGGGCAGGCGGAAACCATCAGCGAGCGCCTGGCCGAAGTCGGGCTGGATGACTATCACCAGCG TATTTACGATCTGGCCCGCGAAGGGGCGAGTCAGATTGCTGCGCGATTCGAGGCGGATGTCGAGCAGGGACGGATCAGCCTTGAGGACCTGTTCGACCGA CAGTATCAGCCGATACCGAATACGCAGCCGGCGAAATTTCAAACCCGTTTCGACCGCTACACCGATCAGGTGTTGCCGGCGATTCAGGAGCCTTTGTTAC CGCGACACGAGGGGTTGGTATTCGCCATTGCCTGTACGCAACAGGGATATGTGCCGACGCACAATCAGCTGTTCAGTCAGCCGTTGACCGGCGATGCGCA GGTCGACGCGGTGAACAATCGCACCAAACGCAAATTTGCTGATCGCACCGGTATTCGCTGCGGCAGCCATCAACAACCGGTGCTGTTGCAGACCTACACC CGCGACACCGGTGAGCTGATGCATGACCTGTCGGTGCCGATCATGATCAAGGGCCGGCACTGGGGTGGATTGCGTCTGGGCTATAAACCGGAAAGTCCGC GTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGATTGTTACTTCTGATGCAATGAATCTGTGCACGGAGCTTGCTTTTTCCGCCCGCAAGAAACCATTAATCTGACCACTTAGTTAGGTTGCTAATGATT TCGGGAGGCTGCATGCAGTGCAGAGTTGATGTTGCCGTGATGATCGGCAGTGGCGTGCCGGCCGGTTTGCGCGCAATGGGTCGAAGTGTGTGCTGGGTGG TGTTGCTCAATGGCGAGCGTCGCGGCACCGCGTTTGCCAGTCGCGACGAGGCCGAGGAGTGCAAGGCTGCGTGGCTCGCGCAGTTGCACGCCGAGCCGGG TGACAGCCTTCACTGACCATTGATTACTTGCCGTCGTGCAGGCGTACATTCAGTTCATCGACCACGATTGCTTCTTCACCGTCGGCCCTTAACCATTCCT TGAGTAATTGCGCCTGTTGCGGCGACCAGAAATCGGCGTCGATCAGTTTGGTCTCAGAGGTCAGTGGATGCGCTTCGATGAAATCGTCGATTGCGTTACC
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| Amino Acid Sequence |
>chemotaxis protein
MTRDGSLVGALPAPVLLPKNRWIAPTLQSIALMLLLAGMSLAGWSLYIGMPLAVLIVWLPRLRSRAIPDTQPADSGSAMSELTRDLSYTTSHNALSAAGV VFSVKELASKLESQLDAAAQIVSNAEVMIATEHATSQLSREALAAASEAHHSSAAGRTELVDSIARMHQLSQRANASRELIEALSVRSDDIQRVTLVIQS IASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAARTASATGEVGEMVADIQQRTAQVVEQIRELSSDLQIGVEQVEHTGQHLENIARLAAGVETQV GEIAQGAETNREQLDSLFKAIEQMRSDLAISDQQTRRLAEAAVQMEGQAETISERLAEVGLDDYHQRIYDLAREGASQIAARFEADVEQGRISLEDLFDR QYQPIPNTQPAKFQTRFDRYTDQVLPAIQEPLLPRHEGLVFAIACTQQGYVPTHNQLFSQPLTGDAQVDAVNNRTKRKFADRTGIRCGSHQQPVLLQTYT RDTGELMHDLSVPIMIKGRHWGGLRLGYKPESPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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