Pseudomonas chlororaphis EA105, NZ35_RS21460

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain EA105 contig_24, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAGACCCTGCTGTTCACGCCATGGCCCGGGCAAGCGGCGTGGCAGGACAAACCCTTGGAGTCGCGGCTGTACGCCAGCCGTCAGGCCGGTGAGCAAGTGC CGGCGGCGATTCAGACACTGCTCGACGAGCAGCAGTCGACCACCCGCGATCTGGCCAACGTCTATCTGCAGTGCCTGATCCTCGGCTTTCATGGGCGTCT GCGGGGCGAACACAGCCAGGTGCAATTGGAGAAGTGGCGGTTGGCGCTGTACACCTTTGCCTGGCAGGACGAAGCGAGTTATGGCGGAGTTAGTCAGCGC TTGGTGCAGCCGTCGCTGACCACTCCATTGCAACTGCCGGTGCGCACGGCGCTGCCGGATGGCTTTCGCCTGGCGCTGGGGATTCTGGCGATGCTGCTGT TGCTGACCGGGCTTGGTCAGTTTCTCTGGCGTGACATTCAGTCGGAACTGGAACCGGTGCTGCAGATCATCGATTCGGTGGCGCCAGCGGAGCAAGACTC
DNA Sequence for Gene
>NZ35_RS21460
ATGAGTACCCTGACGATAGTCGCGTGGATTGTCGCGTTGCTGCTGGTCGTGGTAATCATCGCCGTGGCGGTGTGGTGGTTGCGCACCCAGAGTGGCGCAG CGATCCGCAGTTTTTATGCGGCCGTGCGGCAAATGGAGCAGGAGCAGGGCAGTCACGACCGCTATCAGATGCCATGGCTATTGATGCTCGGCGACGAAAC CCAGGGCACGCAACTGGTCAATGAATGGCGTCTGCAACCGACCGACAAACCAGCGTGGTTCGGCCGCTGGTGGTCAGATCCCGAAGGCGCCGTGCTGGTG GTGCCGCAGGCGCTGTTTCTGCCCGACGACGGTATGCATTTGCAGCGTGGCGGCTGGTGGCGTTTGCTGGGGTTGATCTTACGGATGCGCAGCAAGCGGC CGCTGGACGGGGTGGTCTGGCTGGTGCCGGTCAGTCGTCTGAGCAATCTGGAACAGGCCGCCAGCCTCGGTCTGGCCGCGCGCCGGCGCTTCATCGACCT GTTGCAACGTTTTGGATTGAGTGTGCCGGTGTACGTGATCATCACCGGACTCGAAGAACTGCCGGGATTCCAGGAATTGATCAGCGCGCTGCCCGACGAA GCCCGCGAGCGTACCCTGGGCTGGTCCTCTCCTTATTCCCGCGATGCGGTTTGGCAAGGGCAGTGGAGCGATCAGGCACTCGATCGCATCCATCGCGCGG TAGCGGAAGCCATTATCGAAATCGGCACGTTGTCCGGCCAGTTGAGCGCCGATCTGTACGCCTTGCCGGAGCGTCTGGAAACGTTGCGGCGTGGTTTGCA GAGTGTTCTGGAACCGGTGTTTCAAGGCAACGCTCAGGGTGAAGCGCCGTGTTTTCGCGGTGTCTATTTCAGCGCCAGCCAGGCCTCGGAGGATGCCAAA GACGGATTCTCCGCCGACGACAGCGGCTTGCAGCAAAGCGTGTTCGTGCGCCAGTTGTGGCGCCAGCGCCTGGTCGGCGAGCGCGGATTGGCGCAAGGCG TGCCGCGTCTGTTGCGCTTGCGTCAGCGTTGGCAGCGATTGACGGCCGGTGTGGCGCTGGTAGTCGGGGTGATCTGGGCGGTGGCGATGCTGTGGGTCTG GCAGGTGTCGGTCAAGGATGCCCACGAACTGGCGCGGCAGATGCAGGGCGCGCAAAAAGGCTACGTGGCGATCAGCGACGAGGCGCAGCGGGTCGACTCG ACCCGACGCAATGTGCAGACCTTTTGGCGTGTGCTGGAGCGTGCGCCGCACTGGAACTACGTTTCTCTGGTGTTTCCGACGTCGTGGTTTTCCTCGCTCG ACAATCGACTCGAACAGCAAGTATTGCAGTCCACCCAGCGCCACATCATGGTGCCGCTGCATGACCTGTTGAGCGCGCAACTAGCGCAGATCAAGGCGAT CCGCAGCACCGACCGACGCAGCAGTGTCGAAAGCGACGACCCGGCGCAGTGGCAGAACTATCTGAAGGCGAACGATCTGGTGGATCGGGCACTGCGATTG GAGCAGCAGAATCAGCTGTTCAATCAGGTGCAAAACAATCAGCGCGCGCCACTGGACGACCTGGTGCAACTGAGCAACAACGCGCTGTCGCTGAACCTCA ACACGGGCACCTTGCCCTACGCGGCGTTCTACAATCGGCTGCTCGTGGCCGGGGAAGACGGCAGCTTGCAGGCGCTTGATCTGAGCGTCGACCGGCCGCA GATCGTCAGTAACTTTTCCGGGTTGATGCAGCGCTGGCTGGATCAATATTTTCTCGCCGACAACTTTGTCAGCAAGGCCGGTTACCTCAAGTTGCATCTG GATCAACTGCAAGCTGGCAGCGGCAACAGCCTGCGCGAGCTGGAAGACCTGACCGCGCTGGTCGACGATCTGCAAGCGGCGATCGCCCTGACCAATTCGA CGTGGAGTCGCGGCAAGGGCCAGGAGCTGGTGCCGGGTTATGGTGACTTCCTCGCCAAAGTGGGCAAGAGCACATTGTTGGGCGCGCAAGTCCAACAAGA CCTCGACACGCAAGCGTCACGCTTGCAGCAGAGTTTCCGCGATCAATGGATCGCCCAGATCGGTTCGCGGGACAACCTGCTGGTGCAGCAAGTCAGCGGG CAGTTGGCGTTGCAAGACCAAGTGGTGAAACTCGATAACGCGATACAGGCGCTGTTCAAGCGCGACTTCGTTTCGGTCGCCCTGCGTGCCAGCGAAGACA ACGTCAATATGCAAGGCCAGACCGTGGACGGCGATGACCTCAATGAGTCGCTGAAATATTTCGCCGATTACAACAGCTACATCGCCGAAGAACTGCCACG CATTCCACCGGACTATCGCGTTGCGGTGCTCAAAGCCGCCGAGCGTGCCGCCGCCCAGGCGATGTGGTTGAGCCTCAAGGATCACAACGATCAGGCGCAT CCTTACGCTGTGTTCAATGTGCAGGCCGAGCAAGCCATGGCCCTGCAAAAGGCTTTCGTCGAGGTGCACCGCGCGGATCTCTCCACCCGCCTGCAAGCGG CGCTCAATCGCCGCGCCATGGCGCAGCTTATTGGTGGTCTGGATGAAATCACCGCGCAACCGCTGTTCGGCGGACGGGCCGAAATCAGCCAGTGGGACGG TTCGAAAAACCTTGGTCTGGAACTGTTCGGCGCCAGCGACGTGCAGGATCTCAAACTGAGCCTCAAGCAGCAGTTCAACACCATGCTCGGCATCACTGAG CGGCGCACGTCATCGTTGCAGTGGCTGACAACGCAGCAAGCCAATCTGTCGGCACTGGATTACGAACGCGTGACGCAGTTCAGTGCGCTCAACGACGAAC TGCGCAAATACAAAGAGGCCAACCCGGCCAGTTCGCCGGCACAGATCGAGCAACTGGTCAGTCGCGACTTCGTCGAGATGGACGTCAATTCCTGCCTGCA AATGTTGCAGACCGCCAACGTCGCCGGCGGACGCGGCACGTTGGCGATGCGCGCGGTGGAGCTGCAACAGGAAGCCATGCAGCGTTGCCAGATGCTGCAA GTGCAACAGGCCGCTGCGGCATGGAATGAGCTGGCCAACTACTTCAATCAATATCTGGCGGATCGCTTTCCGTTCGCCAACGGCGTGCAGATGCAGGACG CCGATCCGGCGCGGGTTGAGTATTTTCTGCAACTGATCGACAAGAAACTGCCGGTCGCGCAGGCCGGCCTTGTCACCAACCAGACCCCGGAGCGCCTGGC CGCAGCGGACTTTCTCAACCGCTTGAAGCAGGCGAGCACTTGGCTGACGCCGCTGTTCGTGCGTGACAAGAGCGGCATCCTTGGCGTCGAGCTGGACGTG CGCTGGCGCACCGATCGCGATGATGAGCTGGGCGCCGATCAGGTGATTGCCTGGGGCTTGCTCGCTGGCAATCAGCAAATCAACTATCCGGCAGCCGAGC AACCGAACCTGCGCTGGATGGTCGGCCAGCCTGTCCGCCTGACCCTGCGCTGGGCGCGTAACGGCAAGGAGCGGCCAGTCAATGATCCCCAGCAACCGAA TCTGGTGGTGCGTGATCTGGAGGCCGGTTGGGAGTACGGCGGGCCATGGTCATTGCTGCGCCTGATGCGCGCGCATTTCTCGGTGCAGCGTCAGCCAAAC GTGGATTACACCGATTTCCCGCTGACGTTGCGTTTACCCGTGACCGGGGCGCCGGACAGCGTCACCAGCGACTTCACGCGCATGTTCGTGCGTCTGTCGT TGATGAGCCAAGGCTCGAAACTGCCGCTGTCGATCGCGCCGTTGCCAACCCGTGCACCGCGCTCACCGTTTCAGGTGACCGGCAGCACTGCCGCCCTCGA ATCGCAGAAGGAGGACCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCTGCCATCGACCGCTGTGCCAGACCTGATTGATCAACTGCTCGCGCCGATCAGCGCGGACGCGCCCTGTGGCGTCGATTTGCGCTATGAACGTGAGTT CGATCAGTTACGCGACTTGCGCCGCGAGGACGATGCCAGCCTGCCGACCGGTGTCTGGCAGTCGACACTGAAGCGGGCGAACTGGCCGGACGTCGAAAAA CTCACGACGACGTTATTGCTGGAGCGCAGCAAGGACCTGATGCTCAGCGCCTGGCTCGGCGAGGCATGGCTACACCTGCAAGCGCTGGACGGATTGCCCG GCAGTCTGGCGCTGATCGCCGGTTTGTGTGAACGCTTTCCCGAGCAGTTGCACCCGCAGGCCGAGGACGGCGACCAGTCGTGGCGGGTGATTCCGCTGGA ATGGCTGGTACGCCGCTACAGTGAAATATTGCTCACGCGGGTGCCCTTGTTCGGTAGCCGCAACAGCGATTTCGAGGCTTACACCCTGGAAGTCTGGCGG
Amino Acid Sequence
>type VI secretion system protein ImpL
MSTLTIVAWIVALLLVVVIIAVAVWWLRTQSGAAIRSFYAAVRQMEQEQGSHDRYQMPWLLMLGDETQGTQLVNEWRLQPTDKPAWFGRWWSDPEGAVLV VPQALFLPDDGMHLQRGGWWRLLGLILRMRSKRPLDGVVWLVPVSRLSNLEQAASLGLAARRRFIDLLQRFGLSVPVYVIITGLEELPGFQELISALPDE ARERTLGWSSPYSRDAVWQGQWSDQALDRIHRAVAEAIIEIGTLSGQLSADLYALPERLETLRRGLQSVLEPVFQGNAQGEAPCFRGVYFSASQASEDAK DGFSADDSGLQQSVFVRQLWRQRLVGERGLAQGVPRLLRLRQRWQRLTAGVALVVGVIWAVAMLWVWQVSVKDAHELARQMQGAQKGYVAISDEAQRVDS TRRNVQTFWRVLERAPHWNYVSLVFPTSWFSSLDNRLEQQVLQSTQRHIMVPLHDLLSAQLAQIKAIRSTDRRSSVESDDPAQWQNYLKANDLVDRALRL EQQNQLFNQVQNNQRAPLDDLVQLSNNALSLNLNTGTLPYAAFYNRLLVAGEDGSLQALDLSVDRPQIVSNFSGLMQRWLDQYFLADNFVSKAGYLKLHL DQLQAGSGNSLRELEDLTALVDDLQAAIALTNSTWSRGKGQELVPGYGDFLAKVGKSTLLGAQVQQDLDTQASRLQQSFRDQWIAQIGSRDNLLVQQVSG QLALQDQVVKLDNAIQALFKRDFVSVALRASEDNVNMQGQTVDGDDLNESLKYFADYNSYIAEELPRIPPDYRVAVLKAAERAAAQAMWLSLKDHNDQAH PYAVFNVQAEQAMALQKAFVEVHRADLSTRLQAALNRRAMAQLIGGLDEITAQPLFGGRAEISQWDGSKNLGLELFGASDVQDLKLSLKQQFNTMLGITE RRTSSLQWLTTQQANLSALDYERVTQFSALNDELRKYKEANPASSPAQIEQLVSRDFVEMDVNSCLQMLQTANVAGGRGTLAMRAVELQQEAMQRCQMLQ VQQAAAAWNELANYFNQYLADRFPFANGVQMQDADPARVEYFLQLIDKKLPVAQAGLVTNQTPERLAAADFLNRLKQASTWLTPLFVRDKSGILGVELDV RWRTDRDDELGADQVIAWGLLAGNQQINYPAAEQPNLRWMVGQPVRLTLRWARNGKERPVNDPQQPNLVVRDLEAGWEYGGPWSLLRLMRAHFSVQRQPN VDYTDFPLTLRLPVTGAPDSVTSDFTRMFVRLSLMSQGSKLPLSIAPLPTRAPRSPFQVTGSTAALESQKEDL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site