Pseudomonas chlororaphis EA105, NZ35_RS21435

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain EA105 contig_24, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGGCAACGCCATCGAGAAAAAAGAACTGCCGCTGGTGGTCGGGATCCTCGCTGACCTCTCGGGCAAGCCGCTAGAACCATTGGCAAAACTGACTGACCG GCGGTTTACCGAAATCGACCGCGACAACTTCAACGAAGTGCTCGCCTCGATCAGCCCGCGCGCCACGCTGCAGGTCAACAACACCCTCAGCGGCGATGAC AGCAAGCTCAATATCGAACTCAACTTCAAACACATCGACGACTTCGATCCGGTCAAAGTGGTGGAGCAAGTCACCCCGCTGCGGCGCCTGTTCGAAGCCC GCCAGCGCCTGCGCGATCTGCTGACCAAACTCGATGGCAACGATGACCTGGACAAGCTGTTGCGCGACGTCATCGCCAACACCGAAGGCCTGCAGGAAAT CAAATCGGCCCGCCCGGACACCGCTACCCCGGCCGCTGACGCCGAGGCCCCGGCCGAACCGCAAGCCTGATCGTCCACTTAATCGAGGGGAGAATTCGCC
DNA Sequence for Gene
>NZ35_RS21435
ATGCCCGCTTCAGCTCAGAAACAAGCCAGCGACAGTACGACCGAGACACTTTCCCTGCTCGACCAGATCATTCTCGACGGCCGCATGGCCCACGATGACA GTCAGCAGGATTACGCTCGCGACATGCTCGCGGAATTCGCCACCCAGGTACTCGACGAAGGCATGGCCATCGACAAGGACACCGTGGCGATGATCAACGA CCGCATCAGCCAGATCGACGAGCTGATCAGCGCCCAGCTCAACGAGGTCCTGCACCACCCCGACCTGCAAAAACTCGAAGCCTCGTGGCGCGGTCTGCAC CTGCTGGTGCAGAACACCGAAACCAGCACCCGGCTGAAACTGCGCCTGCTCAACGTGACGCAGAAAGAGTTGCAGAACGACCTGGAGAAAGCCGTCGAGT TCGACCAGAGCGCACTGTTCAAGAAGATCTATGAAGAGGAATACGGCACCTTCGGTGGCCATCCCTTCAGCCTGTTGGTCGGTGACTACACCTTCGGCCG TCACCCGCAGGACATCGGCCTGCTGGAGAAACTGTCGAACGTCGCCGCCGCGGCTCACGCGCCATTCATTGCTGCCGCCAGCCCTCGTCTGTTCGACATG AACAGCTTCACCGAACTGGCGGTGCCGCGTGATTTGTCCAAGGTCTTCGAGAGCCAGGAGCTGATCAAGTGGCGCTCATTCCGCGAGAGTGAAGATTCGC GCTACGTCTCTCTGGTGCTGCCGCATTTCCTCCTGCGTCTGCCCTACGGCCCCGACACCTCGCCGGTGGAAGGCATCAACTACGTCGAAGACGTCAACGG CACCGACCACAGCAAATACCTGTGGGGCAATGCCGCGTGGGCGCTGTCGCAACGCATCACCGAAGCCTTTGCCAAGTACGGCTGGTGCGCGGCGATTCGC GGCGCTGAAGGCGGCGGCGCGGTCGAAGGCTTGCCGGCGCACACCTTCCGCACCAGCTCCGGCGACCTGTCGCTGAAATGCCCGACCGAAGTGGCGATCA CCGACCGCCGCGAGAAGGAACTCAACGACCTCGGTTTCATCGCCCTGTGCCACAAGAAAAACAGCGACGTCGCGGTGTTCTTCGGCGGCCAGACCACCAA CAAGTCCAAGGTCTACAACACCAACGAGGCCAACGCCAACGCGCGGATCTCGGCGATGCTGCCGTACGTGCTCGCGGCGTCGCGTTTCGCCCATTACCTG AAGGTGATCATGCGCGACAAGGTCGGCAGTTTCATGACCCGCGACAACGTGCAGACCTACCTCAATAACTGGATCGCCGATTACGTGCTGATCAACGACA ACGCGCCGCAGGAAATCAAGGCGCAGTACCCGTTGCGTGAAGCGCGGGTGGACGTCACCGAAGTGGCCGGCAAGCCCGGTGCCTATCGCGCGACGGTGTT TCTGCGCCCGCACTTCCAGCTCGAAGAGTTGACCGCGTCGATCCGCTTGGTGGCGACTTTGCCGCCACCGGTTGCTGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCTGCTTTGCCCCCGCCGCTGCTGCGGTGGGGGCTTTCTTTATCTAGCGCGACACCCTTCAGGAGTTTCAAGCGATGGATGCAATCATTCTCGACCTCGG CGGCGACATCAAAGGCGACAGCCTGCTCGAAGGTTTTGCGGACAAGATCGAAGTCATGTCCTACAGCCACAACGTGGCGATGCAAGTCACCAACGACGTC AGCAACTCGGAACGGACTTCCGGTAAACCCCATGTCGGCGAGTTCACCGTGACCAAGTTTATCGACAGCTCGACGCCGTCACTCAACGAATACTGCTGCG CAGGCAAACCGATCCCCGAAGCCATCATCACCATCGGCCGCAACGCCGCCGAAGGCAGCGGGCAGTTGATGCCCTTTATCGTCTACACCCTCACCAACGT GGTGCTGTCCAACGTCAGTGTCAGCGGCGGCACCGGCGGTAAACCGGTGGAAACCGTGTCGCTGAACTTCACCAAGATCAAATGGGAACTCACCGCACAG
Amino Acid Sequence
>EvpB family type VI secretion protein
MPASAQKQASDSTTETLSLLDQIILDGRMAHDDSQQDYARDMLAEFATQVLDEGMAIDKDTVAMINDRISQIDELISAQLNEVLHHPDLQKLEASWRGLH LLVQNTETSTRLKLRLLNVTQKELQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLVGDYTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRLFDM NSFTELAVPRDLSKVFESQELIKWRSFRESEDSRYVSLVLPHFLLRLPYGPDTSPVEGINYVEDVNGTDHSKYLWGNAAWALSQRITEAFAKYGWCAAIR GAEGGGAVEGLPAHTFRTSSGDLSLKCPTEVAITDRREKELNDLGFIALCHKKNSDVAVFFGGQTTNKSKVYNTNEANANARISAMLPYVLAASRFAHYL KVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVTEVAGKPGAYRATVFLRPHFQLEELTASIRLVATLPPPVAA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site