Pseudomonas chlororaphis EA105, NZ35_RS21200

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis strain EA105 contig_23, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGGACGCGTTTCAGCGTGCGCCAGACGGATCGCAACACCGCGCTCAATGTCTACGAGGGCGCAGTTGAAGCCACTAACCTCCAGGGCGAAAGCCAAGTCG TGCAGGCCGGGCAGCAATTGGTGTTCAGCGCTGGCCGCTTGAACACACCGACCGTGGCGGATCCCTCCCGCGAAGCCTGGCGCCGGGGCCTGTTACTGGC CGATAACCTGCCGCTCGGCGAGCTGATCGAAGAACTTAGCCAATATCGCCCGGGACATCTGCATTGTGATCCTGCGGTGGCGAACTTGTCGGTAATGGGC TCGTTCCCGCTCAAGGACACTGATCAAGCCTTGCGTCTGCTGGAAGCGGCGCTGCCGATCCGCATCGATAAAACCTTCAACTGGTGGGTCAGCGTCGGGC CGAAAGTCTGAAGATTTTTTCTTCTCTCGGTTCCCTTTTCGCAAGTTCATCCGGTTAACCCTCAATAGCCCTCACGTCGTTGATAGCCCCCGGGAACTCC
DNA Sequence for Gene
>NZ35_RS21200
ATGTTGCGCTCCACCCTCGTCCGCACTCGTTTTGCCCTGGCCATGGCATCCGCCGTGCCGGGGTTGTGCGTGTCGATGGCGCTGGCAGATGTGCAGAAGC AACATTACGCAGTGGCTCCCGGCTCATTGGTCACAGTGCTCAACCATTTCGCCGAGCAGAGCGGCCTGTTCATCGCCGGGCACAATGATCTGGCGGCAGA CAAACGCAGCCCCGGCCTGAGCGGTGATTACACCCCGCAACAGGCCCTGCAAATCCTCCTCAAGGGCAGCGGCCTGCAAGCGCAGCGCCTGAGCGGCGGC GGTTATGCCCTGCGCAGCACAGCCACTGCGGATCCACTGCAACTGGACGCCACCACCATCAGTGGAAAAAACCTCGGCGCCATCACCGAAGACACTCACG CCTACACCACCGGCGTCAGTGCCTCCGCCACCGGCCTGCCACTGTCACTGCGCGAAACCCCGCAATCGGTCACGGTGATCACCCGCCAGCAACTCGACGA TCAGGGCGCCAACGGCATCGCCGACGTGTTGCGCCGCGCGCCGGGCATCAGCGTGCAGAATTACGACAGCGAGCGTTGGGAGTTTTCCAGCCGTGGTGCA CCGATCACCAATTTCCAGTACGACGGGGTTAACACCGACTACGACGGCGTCTACGACTACGGCACCACCAGCACCGACATGGCGACCTTCGACCGCGTCG AAATCATCAAGGGCGCCACAGGATTGATGACCGGTTCGGGCGATCCGTCGGCCACGGTCAATCTGATCCGCAAACGCCCTACTCCCGCATTCAAAGCTTC GCTCAGCGGCAGCGTCGGTTCGTGGGACAACTACCGCAGCGAATTCGACATTTCCGGGCCGTTCAACGACAAGCTGCGCGCGCGCTTCGTCGGTGTCCAT CAAGAGCGCAGCGCCTACGCCGATCACTACCAGAACAGCAAAGACATCACCTACGCCATCGTCGAAGCCGATCTGAACCCGGACACTCTGTTGACCATTG GTTTCGATCAACAGAACACCCGCTCACGCGGTGCCACCTGGACCGGTTTCCCGATGTTCTACAGCGACGGTTCGCGGACGAATTTCTCGCGCTCGTTCAA CCCGGCCACAGACTGGAGCCGCCGCGACTTTATCAACCAGACCTTGTTTGCCGCCGTCACGAGGCAATTGCAAAACGACTGGGCGTTGAAAATCAGCTAC GACCGCAAACACCGCGAACACGACACCCTGCTCGGCTCCGCCAGTGGCGGCAATCCGGACCCGGTGAGCGGCGACGGCATGTTCCTCTACATGGGCCAAT TCAAGGGCGACGAGGTGCAGGACAATCTTGATATCAACCTCGGCGGGCCGTTCAGCCTGTTCGGTCGCGAGCATCAGTTGCTGGTCGGTTTCATGTCGAT GAACACGCGCCAGGACAACCCGGTTTACGGCTCGGTGTACCCGCCGCTCAACGGCAGTATTTTCGACTGGCATGGCGAGTTCGCCAAACCGGATATCCCG CAGATCGGCACGGACGCCATCCGCCAACGCCAGACCGGCGCATACCTCTCGACGCGCTTCAGGGCCAGCGACGATCTGGCGCTGATCCTCGGCGCACGCG TCAGTGATTTCAGGGGCAGCGACCATCTCAATTACAGCGACCCGAATACGGCCAATGTCCGCGACGGCTACCGCCAGACCGGGGTGGTCACTCCTTATGC GGGTGCGGTCTACGACCTCGATGACACCTACTCGCTCTACACCAGCTACACGCGCATCTATCAACCGCAACTGAGCAAGGACGCCACGGGCCAGATACTC GACCCGGTGCAGGGCGACAGCTACGAAGCGGGGATAAAGGCCGAATATTTCGACGGCCGGCTCAACGCCAGTTTCGCCGTGTTCCGCATCGAGCAGGACA ACGTCGCCGAACAGGTCAGCGGTTTCGACAATCAGGCGGTGTACCGCGCCGTGCAAGGCGCCACCACCAAAGGTTTCGAGTTCGAACTGGCCGGTGAAAT CGCCGACGGCTGGAACCTCTCCGCCGGCTACGCCTACAACCACACGCGCGATGCCAAGGGTGATCCGGTGTACGCCTCGATTCTGCAAACCACTGCGCCC GAGCAATTGGTGCGGGTGTTCAGCAGCTATCGCCTCCCCGGTGTCTGGCAAAACCTGACTTTGGGCGGCGGCGTCAGTTTGCAGAGTGAATTCTTCGGCA ACGTGTGGCAGCCCGAGGCCAAGCAGAACGTGCGCATCACGCAGGACAGTTATTACTTGGTCGACGCGATGGCGCGCTACCGTTTCAACGAGCACCTGAG CACTTCGCTCAACATCAAGAATCTGTTCGACAAGACCTATTACACGGGCCTTGGCAATTTCGGCACCGGTTTCTACGGCGAACCACGCAACCTGCAACTG ACCGCGCGCTGGGATTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGCACGGCAACTTGTCGATCTACGGCACCGGCAATCAACCAAGGACTGACTACGCTGTTAATCCAGCGTGTCTAACCTGCCGAGGATGACTGCCATGCAA CGCTTTCAGAAACTCACGCCCTGCCTGTGGTTCGACGATCAGGCCGAAGCTGCGGCGAAGTTCTATTGCTCGATCTTCGATCACTCGAAAATCACCGGCC TGACCCACTACAGCAAGGTCGGTCAGGAATTTCACGGCAAGCCGGAAGGTGCGGTGATGACCGTCAGTTTCGAACTCGATGGCCAGACCTTCACCGGGCT CAACGGCGGGCCGATGTTCAAATTCAGCGAGGCGATCTCGTTTCAGGTCAATTGCCAGAATCAGGAAGAAGTCGACCATTTCTGGGGCAACCTGTCCGAG GGTGGCCCCGTCGAGGCCCAGCAATGCGGCTGGCTCAAGGACAAATTTGGGGTGTCATGGCAGATCGTGCCGGTGGCGTTCATGCACATGATGCTGGATG
Amino Acid Sequence
>TonB-dependent receptor
MLRSTLVRTRFALAMASAVPGLCVSMALADVQKQHYAVAPGSLVTVLNHFAEQSGLFIAGHNDLAADKRSPGLSGDYTPQQALQILLKGSGLQAQRLSGG GYALRSTATADPLQLDATTISGKNLGAITEDTHAYTTGVSASATGLPLSLRETPQSVTVITRQQLDDQGANGIADVLRRAPGISVQNYDSERWEFSSRGA PITNFQYDGVNTDYDGVYDYGTTSTDMATFDRVEIIKGATGLMTGSGDPSATVNLIRKRPTPAFKASLSGSVGSWDNYRSEFDISGPFNDKLRARFVGVH QERSAYADHYQNSKDITYAIVEADLNPDTLLTIGFDQQNTRSRGATWTGFPMFYSDGSRTNFSRSFNPATDWSRRDFINQTLFAAVTRQLQNDWALKISY DRKHREHDTLLGSASGGNPDPVSGDGMFLYMGQFKGDEVQDNLDINLGGPFSLFGREHQLLVGFMSMNTRQDNPVYGSVYPPLNGSIFDWHGEFAKPDIP QIGTDAIRQRQTGAYLSTRFRASDDLALILGARVSDFRGSDHLNYSDPNTANVRDGYRQTGVVTPYAGAVYDLDDTYSLYTSYTRIYQPQLSKDATGQIL DPVQGDSYEAGIKAEYFDGRLNASFAVFRIEQDNVAEQVSGFDNQAVYRAVQGATTKGFEFELAGEIADGWNLSAGYAYNHTRDAKGDPVYASILQTTAP EQLVRVFSSYRLPGVWQNLTLGGGVSLQSEFFGNVWQPEAKQNVRITQDSYYLVDAMARYRFNEHLSTSLNIKNLFDKTYYTGLGNFGTGFYGEPRNLQL TARWDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site