Pseudomonas chlororaphis EA105, NZ35_RS05515
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCTGCACCAACCAGAACCTGCCACGCAAGCTCAAGCTTGGCGACATCTGCATGGCCTGCGAAGAGACGCCCGAGTTCTTGAGTTTCCGCAACATCACCC CGGCCACGTCGAGCTTCGCGCCACCGCTGAACCGTGACTTCCTCTGGAAGCTGATCAGCAACATGTCGCTTAACTATCTGTCGCTGGCCGACGTCAATGC GTTGAAGGTGATTCTTGAAACCTACGACCTGCCGCGTTACTACGACCAGCACGCGGAGAAGGTCAGCAAACGCCTGCTCGGCGGCCTCAAGCACATCAAG CATCACCACGTTGACCGCTTGCACCGTGGGCTGCCGGTGCGTGGTTTGCGCACCGAGCTGACCATCGACCCGGAAGGGTACATCGGCGAAGGCGACCTGT TCGTTTTCGCTTCGGTTCTTAACGAGTTTTTCGCGCTTTACGCCAGTCTCAACTCATTCCATGAGCTGCGCGTAAAAAGCACACAGGGAGAGGTGTACCA
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| DNA Sequence for Gene |
>NZ35_RS05515
ATGGACACCACGTATGGGCCTGCAGCCCCTGCTTTAAGCGGGCTGACCAAGGTAATACGCGAGTACTCGCTGTTTCAGGCCGTGCTGCTGGTGATCGACC GGCTGCGCGAGGCACACCCGCACCTGAGCGAAGACGATCTGTACGACCACGTGGAGTTCCAGGCCAACCCGAGCCTGGGCTTTCCGCGCAGCGACGTCGA TCGCGTCGAGTTTTTCGAAGAGCACGGGCAGATGCGCGCGCGCATGCGTTTCAACCTGATCGGCCTGGTCGGCTCGGGTTCGCCATTGCCGGCGTTCTAC GGCGAACAGGCGTTAGGCGACAGCGAAGACGGCAACCCGACACGCAACTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGC GCAAGTACCGCTACCGCGCAAGCTTCCAGAGTGGCGCGATTGACCCGTTCTCGTCGCAGCTGTTCGCCCTGATCGGCCTCGGTGGCGAAGAGATCCGCAA GGCCAAGGAACTCAACTGGAAACGCCTGCTGCCGTACCTCGGTCTGCTCAGCTTGCGCGCGCACTCGGCGGCGCTGATCGAAGCCGTGCTGCGTTACTAC TTCAAGCACGAAGACCTGGTCATCGAGCAGTGCATCGAGCGCCGCGTAGAAATTCTCGAAGAGCAGCGCAATCGTTTGGGCCGCGCCAACAGCCTGCTCG GTGAAGACCTCGTGCTCGGCGAACACGTGCGCGACCGCAGCGGCAAATTCCGCATTCACATCACCGAACTCGACTGGCAGCGATTCCATGAATTCCTGCC GATCGGTTTCGGTTACCAGCCGCTCTGCGCGCTGGTGCGGTTCACCCTGCGTGACCCGCTCGATTACGACATCCGCCTGGTGTTGCGCCAGGAAGAAATC CGCGAACTGCGCATCGGTGAGCAGAACGCCTGTCGCCTCGGTTGGACCAGTTGGCTGGGCCGCGAGAAAGCGGACGGCGTGGTGACCCTGGGCAGCAAAA TTCATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGACGTGAGCCATGATCAACGTAGACCTGCAACAACTCATCCAGGCGCTGGACGCCGAAACCCGTCGTGATCTGGAACGTTCTGCCGAGCGTTGCGTGGC CCGTGGTGGCAGCAAGATCCTCGTCGAAGATTTGATGCTCGGTCTGCTCGAGCGTCCGAACGGCTTGCTGTCGCGCGCACTGCAGGATGCCGACGTCGAC GCCGGTGAACTGAGCGCCGCGCTGCAATCGCGCGTCGAACACAGCGCTTCGCGCAATCCGGTGTTCGCCCCGGAACTGGTGCAGTGGCTGCAAGACGCGC TGCTGGTGGCCAACCTCGAACTGGGCCAGACCCAGGTTGAAGATGCGGCGCTGATCCTTGCCCTGCTGCGCAATCCGATGCGCTACGCCGGCAGCCGCTA TCAGCCGCTGCTCGCTAAGTTGAACATTGATCGCCTGAAGGAATTTGCCCTGTCGCAACAGGAGCAACCGGCGGCCAATGGCAAACCGGTCGCCCAGGGC
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| Amino Acid Sequence |
>type VI secretion protein
MDTTYGPAAPALSGLTKVIREYSLFQAVLLVIDRLREAHPHLSEDDLYDHVEFQANPSLGFPRSDVDRVEFFEEHGQMRARMRFNLIGLVGSGSPLPAFY GEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWRKYRYRASFQSGAIDPFSSQLFALIGLGGEEIRKAKELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHEDLVIEQCIERRVEILEEQRNRLGRANSLLGEDLVLGEHVRDRSGKFRIHITELDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEI RELRIGEQNACRLGWTSWLGREKADGVVTLGSKIH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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