Pseudomonas chlororaphis EA105, NZ35_RS05330
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis strain EA105 contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCGGGTAAAACAGCACTTCCCAAAACAGCTGCAAGCGCTTTACATTGGTGCTTGCAGCGCGTTGAAGGGCTTGGTCAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTCAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAA GACTGCCTGAACCACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCACTGGTTCAGT GGGAAAACGACAAGCCTACCGTTGTAGCGCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCGAGCAGGAAATCGTCCAGGATGAGCC GCTGTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGATCACAGCTTACGGCAGGAATTATC
|
|
| DNA Sequence for Gene |
>NZ35_RS05330
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAATGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ATGACGGTCAGCGCCGTCGCAGCGGCGAGGCGTACGTCACGCATCCTCTTGCCGTGGCCAATATTCTTGCCGACATGCACATGGACCATCAAAGCCTGAT GGCCGCGATGCTGCATGACGTGATCGAAGACACCGGTATCGCCAAAGAAGCGCTGCAAGCGCAGTTCGGTGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAATTTCGAGACCAAAGCCGAAGCCCAGGCTGAAAACTTCCAGAAAATGGCCATGGCCATGGCACGCGATATTCGCGTGATCC TGGTCAAGCTTGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGGGAAAAACGCCGCCGCATCGCCAAGGAAACCCTCGAAATCTACGC GCCCATCGCCAATCGGCTGGGCATGCATGCGATCCGCATCGAATTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCCGCGCGGATCTACCAG GCGGTCAAGCGCGCTCGGGGCAACCGCAAGGAAATCGTCAACAAAATCGAAGAATCCCTCGGCCATTGCCTCGCTATCGACGGCATTCAGGGTGAAGTCA GCGGTCGCCAGAAACACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTATGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTACTCGGTGCTGTACATAATTTGTACAAACCGTTGCCAGGGCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCGCTGCATACCACGCTGTTCGGCATGCACGGCGTACCGATCGAGATTCAGATCCGTACCCGTGAAATGGAAGAAATGGCCAACAACG GCATCGCCGCCCATTGGCTATACAAATCCAGCGGTGACGAACAGCCGAAAGGCACTCATGCCCGCGCCCGTCAGTGGGTCAAAGGCGTGCTGGAAATGCA GCAACGTGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCGAAAGGCTCTACGGCGGTCGACTTTGCCTACGCGGTCCACACCGATGTCGGCAACAGCTGCATTGCCTGCCGGATCAACCGTCGCCTCGCACCGC TGTCCGAACCGCTGCAAAGCGGCTCCACGGTCGAGATCGTCAGCGCCCCCGGCGCACGACCAAACCCGGCGTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGTACGCACATCCGCCATGCGTTGAAACTGCAACGCCGCTCCGAGTCCATCAGCCTCGGCGAACGCCTGCTGAACAAAGTCCTCAACGGTTTCGATAGC GCGCTGGAGCAGATTCCGGCGGAACGCGTCAAAGCAATGCTCACCGAGTACCGCCTCGAACTGATCGAAGATTTGCTCGAAGACATTGGCCTCGGCAACC GCATGGCTTACGTCGTTGCCCGACGACTGCTCGGCGAAGGCGAACAGTTGCCAAGCCCGGAAGGTCCGCTGGCGATTCGCGGCACCGAAGGTCTGGTGCT GAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATTGTCGGGCACCTGTCGGCGGGCAAAGGCATGGTCGTGCACCTCGACAACTGCCGCAAC ATCAGCGAAATCCGGCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAACTGCGTGTCGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTCGCCAGCAGCGTCAACGCAGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAGTTGGTGGTCAGCGTCCACGACCGTGTGCACCTGGCCCGCGTGATCAAGAAGCTGCGCGCCTTGACCGGGGTGATTCGCATCACCCGCATGCGT GCATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTCAACCATTACAAGGAGTCATACATGACCAAGACTGTTATCACCAGCGACAAGGCCCCGGCCGCCATCGGTACTTACTCCCAGGCGATCAAGGCCGGCA ACACTGTTTACATGTCGGGCCAGATTCCTCTGGACCCAAAAACCATGGAACTGGTTGAAGGCTTCGAAGCCCAGACCGTCCAGGTGTTCGAGAACCTCAA AGCCGTGGCTGAAGCTGCTGGCGGTTCGTTCAAGGACATCGTCAAACTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGACCAGCCATACCCGGCCCGCGCTGCCATCGGCGTTGCTGCCCTGCCAAAGGGTTCGCAGGTTGAAATGGATGCCATTCTGGTCATCG AGTGATGCGCACGGCGCGGCCGCCAAACGCCGCGCCGACTGCTCAGCAAGAAAAGGTTTTGAAAGGATTCCACCATGCGCAAAGCGCTAGCTCTCCCGCT
|
|
| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGNDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLGHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALEQIPAERVKAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|